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NECEvent2014_6_3_scaffold_316

Alias: 176_003_scaffold_316

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_3_scaffold_316_1
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..97
DNA (96bp) protein (32aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridi
NECEvent2014_6_3_scaffold_316_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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491..718
DNA (228bp) protein (76aa)
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43
secE; preprotein translocase, SecE subunit
NECEvent2014_6_3_scaffold_316_3
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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730..1272
DNA (543bp) protein (181aa)
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
nusG; transcription termination/antitermination factor NusG
NECEvent2014_6_3_scaffold_316_4
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1361..1786
DNA (426bp) protein (142aa)
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.
rplK; ribosomal protein L11
NECEvent2014_6_3_scaffold_316_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1839..2528
DNA (690bp) protein (230aa)
rplA; ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_6_3_scaffold_316_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2741..3244
DNA (504bp) protein (168aa)
ribosomal L10 family protein
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sul
NECEvent2014_6_3_scaffold_316_7
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3287..3652
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF43
rplL; 50S ribosomal protein L7/L12
NECEvent2014_6_3_scaffold_316_8
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3924..7628
DNA (3705bp) protein (1235aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase, beta subunit (EC:2.7.7.6)
NECEvent2014_6_3_scaffold_316_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7650..11180
DNA (3531bp) protein (1177aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6)
NECEvent2014_6_3_scaffold_316_10
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11375..11752
DNA (378bp) protein (126aa)
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
NECEvent2014_6_3_scaffold_316_11
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11864..12370
DNA (507bp) protein (169aa)
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;
rpsG; 30S ribosomal protein S7
NECEvent2014_6_3_scaffold_316_12
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12447..14513
DNA (2067bp) protein (689aa)
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
fusA1; elongation factor G
NECEvent2014_6_3_scaffold_316_13
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14673..14834
DNA (162bp) protein (54aa)
tuf1; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliac
NECEvent2014_6_3_scaffold_316_14
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14831..15751
DNA (921bp) protein (307aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0
Displaying 14 items

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