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NECEvent2014_6_4_scaffold_402

Alias: 176_004_scaffold_402

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_4_scaffold_402_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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365..604
DNA (240bp) protein (80aa)
AbrB family transcriptional regulator
AbrB family transcriptional regulator {ECO:0000313|EMBL:EIA18400.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringe
AbrB family transcriptional regulator {ECO:0000313|EMBL:EIA18400.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringe
NECEvent2014_6_4_scaffold_402_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(916..1758)
DNA (843bp) protein (281aa)
tetrapyrrole methylase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule
NECEvent2014_6_4_scaffold_402_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1761..2531)
DNA (771bp) protein (257aa)
Uncharacterized protein {ECO:0000313|EMBL:EDT25610.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
Uncharacterized protein {ECO:0000313|EMBL:EDT25610.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
hypothetical protein
NECEvent2014_6_4_scaffold_402_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2705..4003)
DNA (1299bp) protein (433aa)
SagA protein {ECO:0000313|EMBL:EIA18485.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
SagA protein {ECO:0000313|EMBL:EIA18485.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
SagA protein
NECEvent2014_6_4_scaffold_402_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4188..4478)
DNA (291bp) protein (97aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA18484.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Uncharacterized protein {ECO:0000313|EMBL:EIA18484.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_6_4_scaffold_402_trna_1
unknown

Not on your lists

4636..4708
DNA (73bp)
transferRNA
NECEvent2014_6_4_scaffold_402_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4887..5033)
DNA (147bp) protein (49aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT25608.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
Uncharacterized protein {ECO:0000313|EMBL:EDT25608.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_6_4_scaffold_402_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5172..6521
DNA (1350bp) protein (450aa)
[Fe] hydrogenase
[Fe] hydrogenase {ECO:0000313|EMBL:EIA18482.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
[Fe] hydrogenase {ECO:0000313|EMBL:EIA18482.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_6_4_scaffold_402_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6604..7257
DNA (654bp) protein (218aa)
haloacid dehalogenase, IA family protein
Haloacid dehalogenase, IA family protein {ECO:0000313|EMBL:ABG85510.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfri
Haloacid dehalogenase, IA family protein {ECO:0000313|EMBL:ABG85510.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfri
NECEvent2014_6_4_scaffold_402_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7393..8826)
DNA (1434bp) protein (478aa)
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT25607.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT25607.1};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT25607.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT25607.1};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
glycoside hydrolase family protein (EC:2.4.1.-)
NECEvent2014_6_4_scaffold_402_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8941..10122)
DNA (1182bp) protein (394aa)
teichoic acid ABC transporter ATP-binding protein
Probable ABC transporter {ECO:0000313|EMBL:BAB79979.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
Probable ABC transporter {ECO:0000313|EMBL:BAB79979.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_6_4_scaffold_402_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10136..11371)
DNA (1236bp) protein (412aa)
glycoside hydrolase family protein (EC:2.4.1.-)
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT13528.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT13528.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT13528.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT13528.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
NECEvent2014_6_4_scaffold_402_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11390..12673)
DNA (1284bp) protein (428aa)
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT13525.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT13525.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT13525.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT13525.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
teichuronic acid biosynthesis glycosyl transferase
NECEvent2014_6_4_scaffold_402_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12687..13859)
DNA (1173bp) protein (391aa)
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS79276.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringen
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS79276.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringen
NECEvent2014_6_4_scaffold_402_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13877..14689)
DNA (813bp) protein (271aa)
ABC-2 type transporter permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str.
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str.
NECEvent2014_6_4_scaffold_402_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15153..15899)
DNA (747bp) protein (249aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
peptidyl-prolyl cis-trans isomerase
NECEvent2014_6_4_scaffold_402_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16580..17047
DNA (468bp) protein (156aa)
anti-oxidant AhpCTSA family protein
Uncharacterized protein {ECO:0000313|EMBL:EDT70450.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1
Uncharacterized protein {ECO:0000313|EMBL:EDT70450.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1
NECEvent2014_6_4_scaffold_402_trna_2
unknown

Not on your lists

comp(17517..17589)
DNA (73bp)
transferRNA
Displaying 18 items

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