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NECEvent2014_6_4_scaffold_238

Alias: 176_004_scaffold_238

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_4_scaffold_238_1
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(150..1757)
DNA (1608bp) protein (536aa)
ABC transporter family protein
ABC transporter ATP-binding protein ykpA {ECO:0000313|EMBL:ETJ12998.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
ABC transporter ATP-binding protein ykpA {ECO:0000313|EMBL:ETJ12998.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
NECEvent2014_6_4_scaffold_238_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1972..2868
DNA (897bp) protein (299aa)
hypothetical protein
Conserved virulence factor B; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Conserved virulence factor B; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
NECEvent2014_6_4_scaffold_238_3
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3472..4449
DNA (978bp) protein (326aa)
thioredoxine reductase
Phosphate-binding protein pstS {ECO:0000313|EMBL:ETJ12996.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Phosphate-binding protein pstS {ECO:0000313|EMBL:ETJ12996.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
NECEvent2014_6_4_scaffold_238_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4656..5582
DNA (927bp) protein (309aa)
Phosphate transport system permease protein pstC (TC 3.A.1.7.1)
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EES36114.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W2
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EES36114.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W2
NECEvent2014_6_4_scaffold_238_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5584..6489
DNA (906bp) protein (302aa)
pstA; phosphate ABC transporter, permease protein PstA
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EFE59787.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M2
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EFE59787.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M2
NECEvent2014_6_4_scaffold_238_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6577..7452
DNA (876bp) protein (292aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-tran
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-tran
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)
NECEvent2014_6_4_scaffold_238_7
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7459..8106
DNA (648bp) protein (216aa)
phoU; phosphate transport system regulatory protein PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus s
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus s
NECEvent2014_6_4_scaffold_238_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8200..10011)
DNA (1812bp) protein (604aa)
Oligoendopeptidase F {ECO:0000313|EMBL:EFE59790.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFE59790.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcu
Oligoendopeptidase F {ECO:0000313|EMBL:EFE59790.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFE59790.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcu
pepF; oligoendopeptidase F
NECEvent2014_6_4_scaffold_238_9
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10259..10597
DNA (339bp) protein (113aa)
putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ14257.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Uncharacterized protein {ECO:0000313|EMBL:ETJ14257.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
NECEvent2014_6_4_scaffold_238_10
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10765..11766
DNA (1002bp) protein (334aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component rbh
Oligopeptide transporter membrane permease protein {ECO:0000313|EMBL:ETJ11172.1}; Flags: Fragment;; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylo
Oligopeptide transporter membrane permease protein {ECO:0000313|EMBL:ETJ11172.1}; Flags: Fragment;; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylo
NECEvent2014_6_4_scaffold_238_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11756..12610
DNA (855bp) protein (285aa)
oligopeptide transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:EFE59793.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;
ABC transporter, permease protein {ECO:0000313|EMBL:EFE59793.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;
NECEvent2014_6_4_scaffold_238_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12573..13349
DNA (777bp) protein (259aa)
ABC transporter family protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE59794.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE59794.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey
NECEvent2014_6_4_scaffold_238_13
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13352..14047
DNA (696bp) protein (232aa)
ABC transporter family protein
ABC superfamily ATP binding cassette transporter, ABC protein {ECO:0000313|EMBL:ETJ11169.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus
ABC superfamily ATP binding cassette transporter, ABC protein {ECO:0000313|EMBL:ETJ11169.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus
NECEvent2014_6_4_scaffold_238_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14177..15187)
DNA (1011bp) protein (337aa)
transferrin receptor
Transferrin receptor {ECO:0000313|EMBL:AAW54352.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Transferrin receptor {ECO:0000313|EMBL:AAW54352.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
NECEvent2014_6_4_scaffold_238_15
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15252..16016)
DNA (765bp) protein (255aa)
Hydrolase {ECO:0000313|EMBL:ETJ11166.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Hydrolase {ECO:0000313|EMBL:ETJ11166.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Hypothetical hydrolase
NECEvent2014_6_4_scaffold_238_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17057..18310)
DNA (1254bp) protein (418aa)
Aminoacyltransferase FemB; EC=2.3.2.18;; Factor essential for expression of methicillin resistance B; N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-(N6-triglycine)-D-alanyl-D-alanine-diphosphoundecapre
Aminoacyltransferase FemB; EC=2.3.2.18;; Factor essential for expression of methicillin resistance B; N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-(N6-triglycine)-D-alanyl-D-alanine-diphosphoundecapre
FemB, factor involved in methicillin resistance / Glycine interpeptide bridge formation
NECEvent2014_6_4_scaffold_238_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18336..19589)
DNA (1254bp) protein (418aa)
Aminoacyltransferase FemA; EC=2.3.2.17;; Factor essential for expression of methicillin resistance A; N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-(N6-glycyl)-D-alanyl-D-alanine-diphosphoundecaprenyl-
Aminoacyltransferase FemA; EC=2.3.2.17;; Factor essential for expression of methicillin resistance A; N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-(N6-glycyl)-D-alanyl-D-alanine-diphosphoundecaprenyl-
FemA, factor essential for methicillin resistance / Glycine interpeptide bridge formation
NECEvent2014_6_4_scaffold_238_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19564..19686)
DNA (123bp) protein (41aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54348.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Uncharacterized protein {ECO:0000313|EMBL:AAW54348.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
NECEvent2014_6_4_scaffold_238_19
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19862..20521)
DNA (660bp) protein (220aa)
hypothetical protein
C56 family peptidase {ECO:0000313|EMBL:ETJ13337.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
C56 family peptidase {ECO:0000313|EMBL:ETJ13337.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
NECEvent2014_6_4_scaffold_238_20
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20712..21443)
DNA (732bp) protein (244aa)
Tryptophan synthase alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1403935 species="
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1403935 species="
NECEvent2014_6_4_scaffold_238_21
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21436..22644)
DNA (1209bp) protein (403aa)
Tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" so
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" so
NECEvent2014_6_4_scaffold_238_22
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22648..23271)
DNA (624bp) protein (208aa)
Phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
NECEvent2014_6_4_scaffold_238_23
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23261..24049)
DNA (789bp) protein (263aa)
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
NECEvent2014_6_4_scaffold_238_24
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24053..25048)
DNA (996bp) protein (332aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococc
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococc
NECEvent2014_6_4_scaffold_238_25
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25051..25617)
DNA (567bp) protein (189aa)
Anthranilate synthase, amidotransferase component # TrpAb (EC:4.1.3.27)
Anthranilate synthase component II {ECO:0000313|EMBL:ETJ13331.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Anthranilate synthase component II {ECO:0000313|EMBL:ETJ13331.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
NECEvent2014_6_4_scaffold_238_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25614..27020)
DNA (1407bp) protein (469aa)
trpE; anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase component I {ECO:0000313|EMBL:AAW54334.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AAW54334.1};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="
Anthranilate synthase component I {ECO:0000313|EMBL:AAW54334.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AAW54334.1};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="
NECEvent2014_6_4_scaffold_238_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27679..28767
DNA (1089bp) protein (363aa)
Prephenate dehydrogenase # TyrAp/ACT domain,NAD-specific (EC:1.3.1.12)
Prephenate dehydrogenase; Short=PDH;; EC=1.3.1.12;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Prephenate dehydrogenase; Short=PDH;; EC=1.3.1.12;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
NECEvent2014_6_4_scaffold_238_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28839..30101)
DNA (1263bp) protein (421aa)
DNA-damage repair protein
ImpB/MucB/SamB family protein {ECO:0000313|EMBL:AAW54324.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 /
ImpB/MucB/SamB family protein {ECO:0000313|EMBL:AAW54324.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 /
NECEvent2014_6_4_scaffold_238_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30245..30430
DNA (186bp) protein (62aa)
dmpI; 4-oxalocrotonate tautomerase (EC:5.3.2.-)
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epi
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epi
Displaying 29 items

View Taxonomy