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NECEvent2014_6_4_scaffold_358

Alias: 176_004_scaffold_358

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_4_scaffold_358_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(163..564)
DNA (402bp) protein (134aa)
Uncharacterized protein UPF0344
UPF0344 protein M464_0212300 {ECO:0000256|HAMAP-Rule:MF_01536}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
UPF0344 protein M464_0212300 {ECO:0000256|HAMAP-Rule:MF_01536}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
NECEvent2014_6_4_scaffold_358_2

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comp(922..1827)
DNA (906bp) protein (302aa)
Fumarylacetoacetate hydrolase family protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ21256.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Uncharacterized protein {ECO:0000313|EMBL:ETJ21256.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_358_3

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comp(2026..5700)
DNA (3675bp) protein (1225aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000313|EMBL:ETJ21255.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ATP-dependent helicase/nuclease subunit A {ECO:0000313|EMBL:ETJ21255.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ATP-dependent nuclease subunit A
NECEvent2014_6_4_scaffold_358_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5669..9148)
DNA (3480bp) protein (1160aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01452}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01452};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01452};; ATP-dependent helic
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01452}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01452};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01452};; ATP-dependent helic
rexB; exonuclease RexB
NECEvent2014_6_4_scaffold_358_5

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comp(9269..9844)
DNA (576bp) protein (192aa)
Signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000313|EMBL:ETJ21253.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Signal peptidase I {ECO:0000313|EMBL:ETJ21253.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_358_6

Not on your lists

comp(9863..10384)
DNA (522bp) protein (174aa)
Signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000313|EMBL:ETJ21252.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Signal peptidase I {ECO:0000313|EMBL:ETJ21252.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_358_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10388..10963)
DNA (576bp) protein (192aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW53922.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Uncharacterized protein {ECO:0000313|EMBL:AAW53922.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
NECEvent2014_6_4_scaffold_358_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11281..12612)
DNA (1332bp) protein (444aa)
Glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|R
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|R
NECEvent2014_6_4_scaffold_358_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12959..14164
DNA (1206bp) protein (402aa)
Argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00005}; TaxID=176280 species="Bacte
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00005}; TaxID=176280 species="Bacte
NECEvent2014_6_4_scaffold_358_10

Not on your lists

14154..15545
DNA (1392bp) protein (464aa)
Argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000313|EMBL:ETJ21248.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Argininosuccinate lyase {ECO:0000313|EMBL:ETJ21248.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_358_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15695..16744
DNA (1050bp) protein (350aa)
glycerophosphoryl diester phosphodiesterase GlpQ rbh
Glycerophosphoryl diester phosphodiesterase GlpQ, putative {ECO:0000313|EMBL:AAW53918.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epid
Glycerophosphoryl diester phosphodiesterase GlpQ, putative {ECO:0000313|EMBL:AAW53918.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epid
NECEvent2014_6_4_scaffold_358_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16936..18180)
DNA (1245bp) protein (415aa)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
NECEvent2014_6_4_scaffold_358_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18289..19479)
DNA (1191bp) protein (397aa)
rocD; ornithine--oxo-acid transaminase (EC:2.6.1.13)
Ornithine aminotransferase {ECO:0000255|HAMAP-Rule:MF_01689}; Short=OAT {ECO:0000255|HAMAP-Rule:MF_01689};; EC=2.6.1.13 {ECO:0000255|HAMAP-Rule:MF_01689};; Ornithine--oxo-acid aminotransferase {ECO:00
Ornithine aminotransferase {ECO:0000255|HAMAP-Rule:MF_01689}; Short=OAT {ECO:0000255|HAMAP-Rule:MF_01689};; EC=2.6.1.13 {ECO:0000255|HAMAP-Rule:MF_01689};; Ornithine--oxo-acid aminotransferase {ECO:00
Displaying 13 items

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