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NECEvent2014_6_5_scaffold_563

Alias: 176_005_scaffold_563

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_563_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..405)
DNA (405bp) protein (135aa)
nucleoside transporter, NupC family protein
Na+ dependent nucleoside transporter domain-containing protein {ECO:0000313|EMBL:KJU71963.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_6_5_scaffold_563_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(455..1273)
DNA (819bp) protein (273aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=289380 species="Bac
NECEvent2014_6_5_scaffold_563_3
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1480..2790)
DNA (1311bp) protein (437aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuram
murC; UDP-N-acetylmuramate--alanine ligase (EC:6.3.2.8)
NECEvent2014_6_5_scaffold_563_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3061..3876
DNA (816bp) protein (272aa)
pur operon repressor
Pur operon repressor {ECO:0000313|EMBL:AJG96792.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP
NECEvent2014_6_5_scaffold_563_5
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4003..4290
DNA (288bp) protein (96aa)
spoVG; putative septation protein SpoVG
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43
NECEvent2014_6_5_scaffold_563_6
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4661..6028
DNA (1368bp) protein (456aa)
glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.7.7.23)
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_6_5_scaffold_563_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6083..7042
DNA (960bp) protein (320aa)
prs; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
NECEvent2014_6_5_scaffold_563_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7233..7919
DNA (687bp) protein (229aa)
response regulator
Transcriptional regulator {ECO:0000313|EMBL:KJU71971.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_6_5_scaffold_563_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7920..9335
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sour
HAMP domain protein
NECEvent2014_6_5_scaffold_563_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9352..10470
DNA (1119bp) protein (373aa)
PDZ domain protein
PDZ domain protein {ECO:0000313|EMBL:AIY84876.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
NECEvent2014_6_5_scaffold_563_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10639..11214
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
NECEvent2014_6_5_scaffold_563_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11229..14735
DNA (3507bp) protein (1169aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1561 species="Bacteria; Firm
transcription-repair coupling factor
NECEvent2014_6_5_scaffold_563_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14858..15844
DNA (987bp) protein (329aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
PPIC-type PPIASE domain protein
NECEvent2014_6_5_scaffold_563_14
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15984..16541
DNA (558bp) protein (186aa)
Stage V sporulation protein T {ECO:0000313|EMBL:ERI93116.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
spoVT; stage V sporulation protein T
NECEvent2014_6_5_scaffold_563_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16643..17536
DNA (894bp) protein (298aa)
spoVB1; stage V sporulation protein B
Stage V sporulation protein B {ECO:0000313|EMBL:AGX41190.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicu
Displaying 15 items

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