ggKbase home page

NECEvent2014_6_5_scaffold_567_16

Organism: NECEvent2014_6_5_Clostridium_paraputrificum_30_193

near complete RP 48 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: 15865..16563

Top 3 Functional Annotations

Value Algorithm Source
sporulation sigma factor SigK similarity KEGG
DB: KEGG
  • Identity: 84.0
  • Coverage: 231.0
  • Bit_score: 389
  • Evalue 8.30e-106
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRR similarity UNIPROT
DB: UniProtKB
  • Identity: 84.0
  • Coverage: 231.0
  • Bit_score: 389
  • Evalue 4.10e-105

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium pasteurianum → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 699
GTGTTTATATTATCAAATTTTTTAAATCTTATAACTAACTCCCTATTCTTAACTGGGTATATTACTGGAAATAACACATTTCCTTTACCACTTGATGAAAAAGATGAGGAATTATACTTAAACAAACTAAAAGAGGGAGATAAAAAAGCAAAAAGTATCTTAATTGAAAGGAATCTCCGACTAGTTGCTCATATTGTAAAGAAGTATTCTTTTCCTAATAAAGATGTAGATGAATTAATTTCTATTGGCACAGTAGGACTTATAAAAGCGATAGATTCCTTCGATTCATCAAAAGGTACTAGACTTGCTACTTATGCTTCTAGATGTATAGAAAATGAAATACTAATGTTGTTTAGAAATAATAAGAAACAAAAGAGTGAGGTTTATTTGCAGGATCCAATAGGAGTGGACAAAGAAGGTAATGAAATTTGTCTTATTGATGTTTTAAGTAGTGAAAAAGATTCTGTAATTGAAAAGGTGGAAAGCAATCTTCAGATAAAATCTTTATACAATAAAATGTATGAAGTATTAACAAAAAGAGAATGTGATATTCTAATAATGAGGTATGGGTTAGAAGATGGAAAGTGTAAGACACAAAGAGAGATAGCGGTAAACCTTAATATTTCTAGGTCATATGTATCGCGTATTGAAAAAAAAGCTTTAAAAAAGTTGCAAAAAGCTTTATATACAAAGATATAA
PROTEIN sequence
Length: 233
VFILSNFLNLITNSLFLTGYITGNNTFPLPLDEKDEELYLNKLKEGDKKAKSILIERNLRLVAHIVKKYSFPNKDVDELISIGTVGLIKAIDSFDSSKGTRLATYASRCIENEILMLFRNNKKQKSEVYLQDPIGVDKEGNEICLIDVLSSEKDSVIEKVESNLQIKSLYNKMYEVLTKRECDILIMRYGLEDGKCKTQREIAVNLNISRSYVSRIEKKALKKLQKALYTKI*