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NECEvent2014_6_5_scaffold_567

Alias: 176_005_scaffold_567

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_567_1
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..321
DNA (321bp) protein (107aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiac
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-)
NECEvent2014_6_5_scaffold_567_2
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

435..935
DNA (501bp) protein (167aa)
PRC-barrel domain-containing protein
Photosystem reaction center subunit H {ECO:0000313|EMBL:ETD71506.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteuri
NECEvent2014_6_5_scaffold_567_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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913..1944
DNA (1032bp) protein (344aa)
permease
Permease {ECO:0000313|EMBL:ACD24042.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B)
NECEvent2014_6_5_scaffold_567_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2249..4888
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
alaS; alanine--tRNA ligase (EC:6.1.1.7)
NECEvent2014_6_5_scaffold_567_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5023..5280
DNA (258bp) protein (86aa)
hypothetical protein
UPF0297 protein SR42_10475 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_6_5_scaffold_567_6
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5333..5752
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=457396 specie
hypothetical protein
NECEvent2014_6_5_scaffold_567_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5828..6097
DNA (270bp) protein (90aa)
hypothetical protein
UPF0473 protein UC77_14035 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_6_5_scaffold_567_8
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6124..6585
DNA (462bp) protein (154aa)
ferric uptake regulator family protein
Putative Probable transcription regulator {ECO:0000313|EMBL:CDG01532.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chau
NECEvent2014_6_5_scaffold_567_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6626..8293
DNA (1668bp) protein (556aa)
rnjA1; ribonuclease J 1 (EC:3.1.-.-)
Ribonuclease J 1 {ECO:0000313|EMBL:AGX42335.1}; EC=3.1.-.- {ECO:0000313|EMBL:AGX42335.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_6_5_scaffold_567_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8430..10256
DNA (1827bp) protein (609aa)
GTP-binding protein TypA {ECO:0000313|EMBL:KHD15574.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
typA; GTP-binding protein TypA/BipA
NECEvent2014_6_5_scaffold_567_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10339..11391
DNA (1053bp) protein (351aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42337.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM
NECEvent2014_6_5_scaffold_567_12
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11406..12050
DNA (645bp) protein (215aa)
O-methyltransferase family protein {ECO:0000313|EMBL:AJG97849.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (
O-methyltransferase, family 3
NECEvent2014_6_5_scaffold_567_13
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12056..13291
DNA (1236bp) protein (412aa)
Uncharacterized protein {ECO:0000313|EMBL:EEH98223.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
peptidase U32
NECEvent2014_6_5_scaffold_567_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13314..13931
DNA (618bp) protein (206aa)
udk; uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|
NECEvent2014_6_5_scaffold_567_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13992..15593
DNA (1602bp) protein (534aa)
penicillin binding transpeptidase domain protein
Penicillin binding transpeptidase domain protein {ECO:0000313|EMBL:AIY85062.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridi
NECEvent2014_6_5_scaffold_567_16
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15865..16563
DNA (699bp) protein (233aa)
sporulation sigma factor SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRR
NECEvent2014_6_5_scaffold_567_17
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16671..17441
DNA (771bp) protein (257aa)
Twitching motility protein {ECO:0000313|EMBL:EOR27339.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;
twitching motility family protein
Displaying 17 items

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