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NECEvent2014_6_5_scaffold_354

Alias: 176_005_scaffold_354

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_354_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(129..677)
DNA (549bp) protein (183aa)
rimM; 16S rRNA-processing protein RimM rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteri
NECEvent2014_6_5_scaffold_354_2
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(696..944)
DNA (249bp) protein (83aa)
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freun
NECEvent2014_6_5_scaffold_354_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1198..2559)
DNA (1362bp) protein (454aa)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enter
signal recognition particle
NECEvent2014_6_5_scaffold_354_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2725..3516
DNA (792bp) protein (264aa)
Inner membrane protein ypjD {ECO:0000313|EMBL:ETX69938.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundi
membrane protein
NECEvent2014_6_5_scaffold_354_5
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3535..4824
DNA (1290bp) protein (430aa)
Inner membrane protein {ECO:0000313|EMBL:EOQ47360.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp
hypothetical protein
NECEvent2014_6_5_scaffold_354_6
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4874..5467)
DNA (594bp) protein (198aa)
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteria
heat shock protein GrpE
NECEvent2014_6_5_scaffold_354_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5590..6468
DNA (879bp) protein (293aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
ppnK; NAD(+) kinase (EC:2.7.1.23)
NECEvent2014_6_5_scaffold_354_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6554..8215
DNA (1662bp) protein (554aa)
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriale
recombination and repair protein
NECEvent2014_6_5_scaffold_354_9
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8365..8709
DNA (345bp) protein (115aa)
membrane biogenesis protein
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteri
NECEvent2014_6_5_scaffold_354_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8760..9056)
DNA (297bp) protein (99aa)
UPF0125 protein P835_03246 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freu
hypothetical protein
NECEvent2014_6_5_scaffold_354_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9040..9483)
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX69945.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii co
hypothetical protein
NECEvent2014_6_5_scaffold_354_12
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9638..10120
DNA (483bp) protein (161aa)
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citr
smpB; SsrA-binding protein
NECEvent2014_6_5_scaffold_354_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10703..21919
DNA (11217bp) protein (3739aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX69947.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii co
large repetitive protein
NECEvent2014_6_5_scaffold_354_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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22020..23429
DNA (1410bp) protein (470aa)
Type I secretion outer membrane , TolC family protein {ECO:0000313|EMBL:KEL78391.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escher
type I secretion protein TolC
NECEvent2014_6_5_scaffold_354_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23426..25612
DNA (2187bp) protein (729aa)
ATP-binding protein {ECO:0000313|EMBL:KJC13005.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;"
ATP-binding protein
NECEvent2014_6_5_scaffold_354_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25593..26783
DNA (1191bp) protein (397aa)
HlyD family type I secretion membrane fusion protein {ECO:0000313|EMBL:ETX69950.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citroba
secretion protein HlyD
Displaying 16 items

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