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NECEvent2014_6_5_scaffold_139

Alias: 176_005_scaffold_139

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_139_1
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(198..1769)
DNA (1572bp) protein (524aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1523156 species="Bacteria; Firmicutes; Clostrid
rny; ribonuclease Y (EC:3.1.-.-)
NECEvent2014_6_5_scaffold_139_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2020..3099)
DNA (1080bp) protein (360aa)
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1403941 species="Bacteria; Firmicut
recA; recombinase A
NECEvent2014_6_5_scaffold_139_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3270..3860)
DNA (591bp) protein (197aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KJZ83013.1}; EC=2.7.8.5 {ECO:0000313|EMBL:KJZ83013.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Cl
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA (EC:2.7.8.5)
NECEvent2014_6_5_scaffold_139_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3844..5238)
DNA (1395bp) protein (465aa)
rimO; ribosomal protein S12 methylthiotransferase RimO (EC:2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
NECEvent2014_6_5_scaffold_139_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5416..7845)
DNA (2430bp) protein (810aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ82955.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ftsK; DNA translocase FtsK
NECEvent2014_6_5_scaffold_139_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8030..8773)
DNA (744bp) protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:ENZ36045.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
peptidase S14, ClpP
NECEvent2014_6_5_scaffold_139_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8964..10130)
DNA (1167bp) protein (389aa)
Uncharacterized protein {ECO:0000313|EMBL:EEP54074.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
putative peptidase
NECEvent2014_6_5_scaffold_139_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10269..12131)
DNA (1863bp) protein (621aa)
PTS system, beta-glucoside-specific IIABC component family protein (EC:2.7.1.69)
PTS system, beta-glucoside-specific IIABC component {ECO:0000313|EMBL:ENZ36043.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostri
NECEvent2014_6_5_scaffold_139_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12276..13106)
DNA (831bp) protein (277aa)
Uncharacterized protein {ECO:0000313|EMBL:ENZ36042.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
licT; transcription antiterminator LicT
NECEvent2014_6_5_scaffold_139_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13439..14041)
DNA (603bp) protein (201aa)
Galactoside O-acetyltransferase {ECO:0000313|EMBL:ENZ36041.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3
acetyltransferase
NECEvent2014_6_5_scaffold_139_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14102..15001)
DNA (900bp) protein (300aa)
Uncharacterized protein {ECO:0000313|EMBL:ENZ36040.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
putative membrane protein
NECEvent2014_6_5_scaffold_139_12
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(15172..15387)
DNA (216bp) protein (72aa)
TfoX domain-containing protein
TfoX domain-containing protein {ECO:0000313|EMBL:AJQ25655.1}; TaxID=1192197 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans JB
NECEvent2014_6_5_scaffold_139_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15486..16190)
DNA (705bp) protein (235aa)
metal-dependent hydrolase
Putative metal-dependent hydrolase {ECO:0000313|EMBL:ACD23756.1}; Putative ribonuclease {ECO:0000313|EMBL:CDH92358.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
NECEvent2014_6_5_scaffold_139_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16477..17685)
DNA (1209bp) protein (403aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
dapG; aspartokinase 1 (EC:2.7.2.4)
NECEvent2014_6_5_scaffold_139_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17859..18140)
DNA (282bp) protein (94aa)
YlmC/YmxH family sporulation protein {ECO:0000313|EMBL:ENZ36038.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
sporulation protein, YlmC/YmxH family
NECEvent2014_6_5_scaffold_139_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18352..19659)
DNA (1308bp) protein (436aa)
Processing proteinase {ECO:0000313|EMBL:EEP53701.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E
peptidase M16 domain-containing protein
NECEvent2014_6_5_scaffold_139_17
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19805..21910)
DNA (2106bp) protein (702aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=152315
pnp; polyribonucleotide nucleotidyltransferase Pnp (EC:2.7.7.8)
NECEvent2014_6_5_scaffold_139_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22012..22275)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rpsO; 30S ribosomal protein S15
NECEvent2014_6_5_scaffold_139_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22393..23328)
DNA (936bp) protein (312aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=997898 species="Bacteria; Firmicutes;
ribC: riboflavin biosynthesis protein RibC (EC:2.7.1.26 2.7.7.2)
NECEvent2014_6_5_scaffold_139_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23344..24219)
DNA (876bp) protein (292aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
truB; tRNA pseudouridine synthase B (EC:5.4.99.25)
NECEvent2014_6_5_scaffold_139_21
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24236..25213)
DNA (978bp) protein (326aa)
nrnA: bifunctional oligoribonuclease and PAP phosphatase NrnA (EC:3.1.-.- 3.1.3.7)
Uncharacterized protein {ECO:0000313|EMBL:KJZ84576.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
NECEvent2014_6_5_scaffold_139_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25213..25566)
DNA (354bp) protein (118aa)
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rbfA; ribosome-binding factor A
NECEvent2014_6_5_scaffold_139_23
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25580..27673)
DNA (2094bp) protein (698aa)
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBU
infB; translation initiation factor IF-2
NECEvent2014_6_5_scaffold_139_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27689..28009)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:ENZ36028.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ribosomal protein L7Ae/L30e/S12e/gadd45
NECEvent2014_6_5_scaffold_139_25
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28002..28268)
DNA (267bp) protein (89aa)
Nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:KJZ83010.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
hypothetical protein
NECEvent2014_6_5_scaffold_139_26
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28284..29438)
DNA (1155bp) protein (385aa)
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
nusA; transcription termination/antitermination protein NusA
NECEvent2014_6_5_scaffold_139_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29456..29917)
DNA (462bp) protein (154aa)
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
rimP; ribosome maturation factor RimP
NECEvent2014_6_5_scaffold_139_28
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30191..34522)
DNA (4332bp) protein (1444aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1523154 species="Bacteria; Firmicu
polC; DNA polymerase III PolC (EC:2.7.7.7)
NECEvent2014_6_5_scaffold_139_29
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34810..35859)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synt
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG (EC:1.17.7.1)
NECEvent2014_6_5_scaffold_139_30
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36063..37076)
DNA (1014bp) protein (338aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
putative membrane-associated zinc metalloprotease
Displaying items 1-30 of 42 in total

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