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NECEvent2014_6_5_scaffold_213

Alias: 176_005_scaffold_213

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_213_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..251)
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ88035.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
NECEvent2014_6_5_scaffold_213_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(404..1699)
DNA (1296bp) protein (432aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
hisS; histidine--tRNA ligase (EC:6.1.1.21)
NECEvent2014_6_5_scaffold_213_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2039..3379)
DNA (1341bp) protein (447aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ88280.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_6_5_scaffold_213_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3512..4171)
DNA (660bp) protein (220aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transf
aat; leucyl/phenylalanyl-tRNA--protein transferase Aat (EC:2.3.2.6)
NECEvent2014_6_5_scaffold_213_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4183..4485)
DNA (303bp) protein (101aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ88364.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_6_5_scaffold_213_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5199..8714)
DNA (3516bp) protein (1172aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
nifJ1; pyruvate-flavodoxin oxidoreductase NifJ (EC:1.2.7.-)
NECEvent2014_6_5_scaffold_213_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9002..9595)
DNA (594bp) protein (198aa)
Transglutaminase-like protein {ECO:0000313|EMBL:KJZ88345.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
leucine rich repeat protein
NECEvent2014_6_5_scaffold_213_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9791..11713)
DNA (1923bp) protein (641aa)
PTS system fructose-specific EIIBC component {ECO:0000313|EMBL:EEP54121.1}; EC=2.7.1.- {ECO:0000313|EMBL:EEP54121.1};; EC=2.7.1.69 {ECO:0000313|EMBL:EEP54121.1};; TaxID=632245 species="Bacteria; Firmi
fruA: PTS system fructose-specific EIIABC component (EC:2.7.1.- 2.7.1.69)
NECEvent2014_6_5_scaffold_213_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11859..12764)
DNA (906bp) protein (302aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
fruK; 1-phosphofructokinase FruK (EC:2.7.1.56)
NECEvent2014_6_5_scaffold_213_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12766..13509)
DNA (744bp) protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:ENZ34124.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
fruR; HTH-type transcriptional regulator FruR
NECEvent2014_6_5_scaffold_213_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13655..14497)
DNA (843bp) protein (281aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
phosphomethylpyrimidine kinase type-1
NECEvent2014_6_5_scaffold_213_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14761..16296)
DNA (1536bp) protein (512aa)
Uncharacterized protein {ECO:0000313|EMBL:ENZ34126.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
glycoside hydrolase family protein
NECEvent2014_6_5_scaffold_213_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16412..17920)
DNA (1509bp) protein (503aa)
Permease of the Na:galactoside symporter family {ECO:0000313|EMBL:KJZ88320.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridiu
major facilitator superfamily protein
NECEvent2014_6_5_scaffold_213_14
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18110..18289)
DNA (180bp) protein (60aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ95171.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
polysaccharide deacetylase
NECEvent2014_6_5_scaffold_213_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18293..18952)
DNA (660bp) protein (220aa)
Uncharacterized protein {ECO:0000313|EMBL:EEP53399.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
hypothetical protein
NECEvent2014_6_5_scaffold_213_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19070..20275)
DNA (1206bp) protein (402aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ88327.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative unsaturated glucuronyl hydrolase
NECEvent2014_6_5_scaffold_213_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20521..21384
DNA (864bp) protein (288aa)
Membrane protein {ECO:0000313|EMBL:KHD17029.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
eamA-like transporter family protein
NECEvent2014_6_5_scaffold_213_18
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21485..22267)
DNA (783bp) protein (261aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ95163.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
2-deoxy-D-gluconate 3-dehydrogenase
NECEvent2014_6_5_scaffold_213_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22328..23812)
DNA (1485bp) protein (495aa)
Altronate dehydratase {ECO:0000313|EMBL:KJZ88328.1}; EC=4.2.1.7 {ECO:0000313|EMBL:KJZ88328.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
uxaA; altronate dehydratase UxaA (EC:4.2.1.7)
NECEvent2014_6_5_scaffold_213_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24120..25568)
DNA (1449bp) protein (483aa)
Altronate oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00670}; EC=1.1.1.58 {ECO:0000256|HAMAP-Rule:MF_00670};; Tagaturonate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00670}; Tagaturonate reductase {ECO:00
uxaB; altronate oxidoreductase UxaB (EC:1.1.1.58)
NECEvent2014_6_5_scaffold_213_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25762..26712)
DNA (951bp) protein (317aa)
kdgK; 2-dehydro-3-deoxygluconokinase KdgK (EC:2.7.1.45)
2-dehydro-3-deoxygluconokinase {ECO:0000313|EMBL:ETI88571.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_
NECEvent2014_6_5_scaffold_213_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26715..27359)
DNA (645bp) protein (215aa)
dgoA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA (EC:4.1.2.21)
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:ETI88572.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
NECEvent2014_6_5_scaffold_213_23
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27629..29029)
DNA (1401bp) protein (467aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HA
glucuronate isomerase
NECEvent2014_6_5_scaffold_213_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29239..30237)
DNA (999bp) protein (333aa)
Transcriptional regulator of the LacI family {ECO:0000313|EMBL:ETI88574.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium b
exuR; HTH-type transcriptional repressor ExuR
NECEvent2014_6_5_scaffold_213_25
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30445..32229)
DNA (1785bp) protein (595aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
yitJ: bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase (EC:2.1.1.10 1.5.1.20)
NECEvent2014_6_5_scaffold_213_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32413..33609)
DNA (1197bp) protein (399aa)
Uncharacterized protein {ECO:0000313|EMBL:EEP54372.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
anti-sigma factor N-terminus
NECEvent2014_6_5_scaffold_213_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33619..34308)
DNA (690bp) protein (230aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ88356.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative RNA polymerase sigma factor SigI
NECEvent2014_6_5_scaffold_213_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34645..37827)
DNA (3183bp) protein (1061aa)
ATP-dependent helicase (EC:3.6.4.-)
Uncharacterized protein {ECO:0000313|EMBL:ENZ34146.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_6_5_scaffold_213_29
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38016..38519)
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ88351.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
heat shock protein DnaJ domain-containing protein
Displaying 29 items

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