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NECEvent2014_6_5_scaffold_123

Alias: 176_005_scaffold_123

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_123_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

126..971
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-
cobalt transporter ATP-binding subunit
NECEvent2014_6_5_scaffold_123_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

956..1813
DNA (858bp) protein (286aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-
cbiO; cobalt transporter ATP-binding subunit
NECEvent2014_6_5_scaffold_123_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1829..2635
DNA (807bp) protein (269aa)
hypothetical protein
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=451754 species="Bacter
NECEvent2014_6_5_scaffold_123_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2793..3527
DNA (735bp) protein (245aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
NECEvent2014_6_5_scaffold_123_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3674..4108
DNA (435bp) protein (145aa)
rplM; 50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_6_5_scaffold_123_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4135..4527
DNA (393bp) protein (131aa)
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
NECEvent2014_6_5_scaffold_123_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4917..6530
DNA (1614bp) protein (538aa)
putative transporter
Na/Pi-cotransporter family protein/PhoU family protein {ECO:0000313|EMBL:ABG87217.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clos
NECEvent2014_6_5_scaffold_123_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6721..7392
DNA (672bp) protein (224aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EDT23751.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EDT23751.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clo
cwlD; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
NECEvent2014_6_5_scaffold_123_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7399..7551)
DNA (153bp) protein (51aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB82072.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_6_5_scaffold_123_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7652..8509)
DNA (858bp) protein (286aa)
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EDT27489.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str.
NECEvent2014_6_5_scaffold_123_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8763..9461
DNA (699bp) protein (233aa)
DNA-binding response regulator
DNA-binding response regulator {ECO:0000313|EMBL:EDT15919.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E st
NECEvent2014_6_5_scaffold_123_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9514..11268
DNA (1755bp) protein (585aa)
Putative sensor histidine kinase {ECO:0000313|EMBL:EDT16015.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E
sensor histidine kinase
NECEvent2014_6_5_scaffold_123_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11437..11793
DNA (357bp) protein (119aa)
ArsC family protein
ArsC family protein {ECO:0000313|EMBL:EDT15956.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.
NECEvent2014_6_5_scaffold_123_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12077..14308
DNA (2232bp) protein (744aa)
nrdA; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
NECEvent2014_6_5_scaffold_123_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14404..15438
DNA (1035bp) protein (345aa)
nrdF; ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
NECEvent2014_6_5_scaffold_123_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15839..16432
DNA (594bp) protein (198aa)
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE st
NECEvent2014_6_5_scaffold_123_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16605..18611)
DNA (2007bp) protein (669aa)
phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator
Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator {ECO:0000313|EMBL:ABG86932.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
NECEvent2014_6_5_scaffold_123_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19086..20705
DNA (1620bp) protein (540aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=
phosphoenolpyruvate-protein phosphotransferase
NECEvent2014_6_5_scaffold_123_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20870..22039
DNA (1170bp) protein (390aa)
Isoaspartyl dipeptidase {ECO:0000256|PIRNR:PIRNR001238}; EC=3.4.19.- {ECO:0000256|PIRNR:PIRNR001238};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
isoaspartyl dipeptidase
NECEvent2014_6_5_scaffold_123_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22156..22470
DNA (315bp) protein (105aa)
thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).
NECEvent2014_6_5_scaffold_123_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22497..23357
DNA (861bp) protein (287aa)
trxR; thioredoxin reductase
Pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:EDT27455.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium p
NECEvent2014_6_5_scaffold_123_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23389..23991)
DNA (603bp) protein (201aa)
spore cortex-lytic protein
Probable spore cortex-lytic enzyme {ECO:0000313|EMBL:BAB82059.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens
NECEvent2014_6_5_scaffold_123_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24062..25024)
DNA (963bp) protein (321aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG87093.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM1
NECEvent2014_6_5_scaffold_123_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25185..26042
DNA (858bp) protein (286aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT16038.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
NECEvent2014_6_5_scaffold_123_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26009..27337
DNA (1329bp) protein (443aa)
Uncharacterized protein {ECO:0000313|EMBL:EDT23733.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC
hypothetical protein
NECEvent2014_6_5_scaffold_123_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27413..29014
DNA (1602bp) protein (534aa)
Uncharacterized protein {ECO:0000313|EMBL:EDT27447.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
hypothetical protein
NECEvent2014_6_5_scaffold_123_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29197..30105
DNA (909bp) protein (303aa)
ptb; phosphate butyryltransferase (EC:2.3.1.19)
Phosphate butyryltransferase {ECO:0000313|EMBL:EIA16120.1}; EC=2.3.1.19 {ECO:0000313|EMBL:EIA16120.1};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
NECEvent2014_6_5_scaffold_123_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30130..31200
DNA (1071bp) protein (357aa)
buk; butyrate kinase (EC:2.7.2.7)
Probable butyrate kinase {ECO:0000256|HAMAP-Rule:MF_00542}; Short=BK {ECO:0000256|HAMAP-Rule:MF_00542};; EC=2.7.2.7 {ECO:0000256|HAMAP-Rule:MF_00542};; Branched-chain carboxylic acid kinase {ECO:00002
NECEvent2014_6_5_scaffold_123_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31426..33144
DNA (1719bp) protein (573aa)
Iron hydrogenase {ECO:0000313|EMBL:EDS78838.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
hydA; iron hydrogenase
NECEvent2014_6_5_scaffold_123_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33363..34472
DNA (1110bp) protein (370aa)
maltose ABC transporter
Putative maltose/maltodextrin ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDT16031.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
Displaying items 1-30 of 44 in total

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