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NECEvent2014_6_5_scaffold_386

Alias: 176_005_scaffold_386

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_386_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(74..1396)
DNA (1323bp) protein (441aa)
virS; sensor histidine kinase VirS
Two-component sensor histidine kinase {ECO:0000313|EMBL:BAB81206.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringe
NECEvent2014_6_5_scaffold_386_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1390..2100)
DNA (711bp) protein (237aa)
virR; DNA-binding response regulator, LytTr family
DNA-binding response regulator, LytTr family {ECO:0000313|EMBL:EDS81082.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pe
NECEvent2014_6_5_scaffold_386_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2239..3246)
DNA (1008bp) protein (336aa)
Putative N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EDT72543.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium per
hypothetical protein
NECEvent2014_6_5_scaffold_386_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3343..3630)
DNA (288bp) protein (96aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA16782.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_6_5_scaffold_386_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3854..4867)
DNA (1014bp) protein (338aa)
hypothetical protein
3D/G5 domain protein {ECO:0000313|EMBL:EDT26893.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969
NECEvent2014_6_5_scaffold_386_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5293..6591)
DNA (1299bp) protein (433aa)
Putative uracil permease {ECO:0000313|EMBL:EDS80019.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS
uracil transporter
NECEvent2014_6_5_scaffold_386_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6778..8361
DNA (1584bp) protein (528aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDT13950.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringen
ABC transporter ATP-binding protein
NECEvent2014_6_5_scaffold_386_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8412..9374)
DNA (963bp) protein (321aa)
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:EDS80028.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfr
endo-1,4-beta-xylanase
NECEvent2014_6_5_scaffold_386_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9757..11952)
DNA (2196bp) protein (732aa)
topB; DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=289
NECEvent2014_6_5_scaffold_386_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12040..13458)
DNA (1419bp) protein (473aa)
Putative membrane protein {ECO:0000313|EMBL:EDS80020.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JG
hypothetical protein
NECEvent2014_6_5_scaffold_386_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13468..13935)
DNA (468bp) protein (156aa)
membrane flanked domain-containing protein
Putative membrane protein {ECO:0000313|EMBL:EDT26919.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str.
NECEvent2014_6_5_scaffold_386_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14079..14477)
DNA (399bp) protein (133aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26896.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_6_5_scaffold_386_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14685..18011)
DNA (3327bp) protein (1109aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
sensor histidine kinase/response regulator
NECEvent2014_6_5_scaffold_386_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18048..19148)
DNA (1101bp) protein (367aa)
Uncharacterized protein {ECO:0000313|EMBL:EDT24675.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC
hypothetical protein
NECEvent2014_6_5_scaffold_386_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19163..20530)
DNA (1368bp) protein (456aa)
Putative alginate biosynthesis protein AlgI {ECO:0000313|EMBL:EDT24632.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium per
alginate biosynthesis protein AlgI
NECEvent2014_6_5_scaffold_386_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20765..21262)
DNA (498bp) protein (166aa)
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:EIA16795.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_6_5_scaffold_386_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21514..22731)
DNA (1218bp) protein (406aa)
ATP-dependent RNA helicase, DEAD/DEAH box family {ECO:0000313|EMBL:EDT13942.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridiu
DEAD/DEAH box helicase
NECEvent2014_6_5_scaffold_386_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22755..23066)
DNA (312bp) protein (104aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA16797.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_6_5_scaffold_386_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23376..24722)
DNA (1347bp) protein (449aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JG
Displaying 19 items

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