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NECEvent2014_6_5_scaffold_521

Alias: 176_005_scaffold_521

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_521_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1793)
DNA (1791bp) protein (597aa)
von Willebrand factor type A domain protein {ECO:0000313|EMBL:EDT25027.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium per
von Willebrand factor type A domain-containing protein
NECEvent2014_6_5_scaffold_521_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1810..2436)
DNA (627bp) protein (209aa)
Uncharacterized protein {ECO:0000313|EMBL:EDT28024.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
hypothetical protein
NECEvent2014_6_5_scaffold_521_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2439..3170)
DNA (732bp) protein (244aa)
Uncharacterized protein {ECO:0000313|EMBL:EDT16760.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
hypothetical protein
NECEvent2014_6_5_scaffold_521_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3218..3853)
DNA (636bp) protein (212aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB80221.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_6_5_scaffold_521_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3907..4431)
DNA (525bp) protein (175aa)
Signal peptidase I {ECO:0000313|EMBL:EDT24946.1}; EC=3.4.21.89 {ECO:0000313|EMBL:EDT24946.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
signal peptidase type I
NECEvent2014_6_5_scaffold_521_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4670..5419
DNA (750bp) protein (250aa)
Sortase B {ECO:0000313|EMBL:EDT16651.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
sortase
NECEvent2014_6_5_scaffold_521_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5553..7757)
DNA (2205bp) protein (735aa)
Alpha-galactosidase {ECO:0000313|EMBL:EDT25089.1}; EC=3.2.1.22 {ECO:0000313|EMBL:EDT25089.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
alpha-galactosidase (EC:3.2.1.22)
NECEvent2014_6_5_scaffold_521_trna_1
unknown

Not on your lists

comp(8051..8123)
DNA (73bp)
transferRNA
NECEvent2014_6_5_scaffold_521_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8269..8961)
DNA (693bp) protein (231aa)
Uncharacterized protein {ECO:0000313|EMBL:EIA18239.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
NECEvent2014_6_5_scaffold_521_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9281..10225)
DNA (945bp) protein (315aa)
galU; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=883064 s
NECEvent2014_6_5_scaffold_521_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10265..11281)
DNA (1017bp) protein (339aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDT16704.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EDT16704.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
galE; UDP-glucose 4-epimerase
NECEvent2014_6_5_scaffold_521_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11359..13587)
DNA (2229bp) protein (743aa)
Uncharacterized protein {ECO:0000313|EMBL:EDT72109.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1
hypothetical protein
NECEvent2014_6_5_scaffold_521_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14010..14657)
DNA (648bp) protein (216aa)
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:EDT16803.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringen
RNA polymerase sigma factor
NECEvent2014_6_5_scaffold_521_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15053..15946)
DNA (894bp) protein (298aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=451754 s
galU; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
NECEvent2014_6_5_scaffold_521_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16264..16836)
DNA (573bp) protein (191aa)
Transcriptional regulator, LytR family {ECO:0000313|EMBL:EDS80935.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfring
transcriptional regulator, LytR family
NECEvent2014_6_5_scaffold_521_15
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(16957..17889)
DNA (933bp) protein (311aa)
Uncharacterized protein {ECO:0000313|EMBL:CDD64494.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
NECEvent2014_6_5_scaffold_521_16
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17948..18994)
DNA (1047bp) protein (349aa)
membrane protein involved in the export of O-antigen and teichoic acid
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:AGK95874.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
Displaying 17 items

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