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NECEvent2014_6_5_scaffold_1828_2

Organism: NECEvent2014_6_5_Clostridium_7_2_43FAA_28_9

near complete RP 48 / 55 MC: 5 BSCG 45 / 51 MC: 1 ASCG 15 / 38 MC: 2
Location: comp(305..1012)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 452
  • Evalue 3.10e-124
sigE; sporulation sigma factor SigE similarity KEGG
DB: KEGG
  • Identity: 83.0
  • Coverage: 235.0
  • Bit_score: 391
  • Evalue 1.30e-106

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Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 708
ATGATGAGTTTAAGAGTATTAATAAATAGAATTTTACAAAAATTAAAAGTTTTTAAAAATGAAGTCCATTATGTGGGAGGAAATGACGCTCTTCCACCACCTTTAAAAAAAGAGGAGGAAGAAGAACTTGTAGAGAAACTTATACATGGTGATGAATCTATAAGAGATATATTAATTGAAAGAAACTTAAGATTAGTAGTGTATATAGCAAGAAAATTTGAAAATACAGGAGTATGCGTAGAAGATTTAATTTCTGTAGGAACTATTGGATTAATAAAGGCAGTTAATACTTTTAATCCAGAGAAAAAAATAAAATTAGCTACATATGCTTCTAGATGTATAGAAAATGAAATATTAATGTATTTAAGAAGAAATAGTAAAGTAAAAGCAGAGATATCTTTTTATGAACCATTAAATATTGATTGGGATGGTAACGAACTTTTATTATCAGATATTTTAGGAACTGAAAATGATATTGTTTATAATTTAATTGAAGATGAAGTTGATAGACAGTTATTATTCCTAGCATTAAAGCATTTAAATGATAGGGAAAAAGAAATAGTTAAGCTAAGATTTGGTTTAAACGGTACTAGAGAAAAGACTCAAAAAGAAGTTGCAGATATGCTTGGAATATCGCAATCATATATTTCAAGGTTAGAAAAGAAAATAATAAATAGATTGAAAAAAGAAATCAATAAAATGATTTAG
PROTEIN sequence
Length: 236
MMSLRVLINRILQKLKVFKNEVHYVGGNDALPPPLKKEEEEELVEKLIHGDESIRDILIERNLRLVVYIARKFENTGVCVEDLISVGTIGLIKAVNTFNPEKKIKLATYASRCIENEILMYLRRNSKVKAEISFYEPLNIDWDGNELLLSDILGTENDIVYNLIEDEVDRQLLFLALKHLNDREKEIVKLRFGLNGTREKTQKEVADMLGISQSYISRLEKKIINRLKKEINKMI*