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NECEvent2014_6_6_Clostridiales_50_23_scaffold_113_18

Organism: NECEvent2014_6_6_Clostridiales_50_23_plum

near complete RP 47 / 55 MC: 2 BSCG 46 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 16355..16768

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R8H1_CLOSW similarity UNIREF
DB: UNIREF100
  • Identity: 77.9
  • Coverage: 136.0
  • Bit_score: 218
  • Evalue 4.10e-54
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 77.9
  • Coverage: 136.0
  • Bit_score: 218
  • Evalue 1.10e-54
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADL05700.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyt similarity UNIPROT
DB: UniProtKB
  • Identity: 77.9
  • Coverage: 136.0
  • Bit_score: 218
  • Evalue 5.70e-54

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Taxonomy

[Clostridium] saccharolyticum → Lachnoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 414
ATGTCAGAGAACAAAAAATATACCATCGTTATAAAAAGGCAGCGTGTAGAGGTCAGTGAGGCCGTTTACCATGCCTATCATAAAGAGCGTGAAGCAGAACGCTATCAGAACAAGTTGATCCGCCAGAACGAGCTTTCGCTGGAGCGGTTCCATGAGGATGGTGTCAACATCGATTACCTCATCGTCCGTGTTCAGCCAGATGTTGTGGACAGGCTCATTCATCAGGAACAGCTGGAAGTGCTGTGGAGCGCTCTTCAATCTTTGCCGGAGGATGAACTCTCCCTCATTGATGAACTGTTTTTCAATGATAAAAGTGAGCGGGAACTTTCTGCAATGATCTCTGTGCCACAGAAAACTATTAACGACAGGAAAAAACGAATCCTGCTTAAACTTCGGAGATTGATAGAAAATTAA
PROTEIN sequence
Length: 138
MSENKKYTIVIKRQRVEVSEAVYHAYHKEREAERYQNKLIRQNELSLERFHEDGVNIDYLIVRVQPDVVDRLIHQEQLEVLWSALQSLPEDELSLIDELFFNDKSERELSAMISVPQKTINDRKKRILLKLRRLIEN*