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NECEvent2014_6_7_scaffold_351

Alias: 176_007_scaffold_351

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_7_scaffold_351_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..222)
DNA (222bp) protein (74aa)
HRDC domain protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQR6_CLOPF
HRDC domain-containing protein
HRDC domain protein {ECO:0000313|EMBL:EDS79562.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.
NECEvent2014_6_7_scaffold_351_2
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(580..1860)
DNA (1281bp) protein (427aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiracea
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI00030D1BD8 rbh
DNA-cytosine methyltransferase
NECEvent2014_6_7_scaffold_351_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2068..2967)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZAA1_EUBR3 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR73962.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33
NECEvent2014_6_7_scaffold_351_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2969..4300)
DNA (1332bp) protein (444aa)
Cytosine-specific methyltransferase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZAA0_EUBR3 rbh
cytosine-specific methyltransferase
Cytosine-specific methyltransferase {ECO:0000313|EMBL:ACR73961.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (st
NECEvent2014_6_7_scaffold_351_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4301..5020)
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZA99_EUBR3 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR73960.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33
NECEvent2014_6_7_scaffold_351_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5022..5963)
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZA98_EUBR3 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR73959.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33
NECEvent2014_6_7_scaffold_351_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5953..8055)
DNA (2103bp) protein (701aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZA97_EUBR3 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR73958.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33
NECEvent2014_6_7_scaffold_351_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8057..10849)
DNA (2793bp) protein (931aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZA96_EUBR3 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACR73957.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33
hypothetical protein
NECEvent2014_6_7_scaffold_351_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11028..11336)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M5V9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ00377.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
NECEvent2014_6_7_scaffold_351_10
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11357..12523)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FU01_CLOPA rbh
Uncharacterized protein {ECO:0000313|EMBL:ETD67183.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-59
hypothetical protein
NECEvent2014_6_7_scaffold_351_11
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12656..13765)
DNA (1110bp) protein (370aa)
BRCT domain protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FVK4_9CLOT rbh
BRCT domain protein {ECO:0000313|EMBL:CDB16110.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp.
hypothetical protein
NECEvent2014_6_7_scaffold_351_12
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13767..14186)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G3Q4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB16109.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
NECEvent2014_6_7_scaffold_351_13
Enterococcus dispar, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14379..15356)
DNA (978bp) protein (326aa)
Tagatose 1,6-diphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; EC=4.1.2.40 {ECO:0000256|HAMAP-Rule:MF_00734};; D-tagatose-1,6-bisphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; Tagatose-bi
tagatose 1,6-diphosphate aldolase (EC:4.1.2.40)
Tagatose 1,6-diphosphate aldolase 2 n=1 Tax=Enterococcus dispar ATCC 51266 RepID=S0KNQ2_9ENTE rbh
NECEvent2014_6_7_scaffold_351_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15409..15924)
DNA (516bp) protein (172aa)
lacB; galactose-6-phosphate isomerase subunit LacB (EC:5.3.1.26)
Galactose-6-phosphate isomerase subunit LacB {ECO:0000255|HAMAP-Rule:MF_01556}; EC=5.3.1.26 {ECO:0000255|HAMAP-Rule:MF_01556};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; C
Galactose-6-phosphate isomerase subunit LacB n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=LACB_CLOPE rbh
NECEvent2014_6_7_scaffold_351_15
Enterococcus pallens, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15946..16374)
DNA (429bp) protein (143aa)
Galactose-6-phosphate isomerase subunit LacA {ECO:0000256|HAMAP-Rule:MF_01555}; EC=5.3.1.26 {ECO:0000256|HAMAP-Rule:MF_01555};; TaxID=1158607 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; E
lacA; galactose-6-phosphate isomerase subunit LacA (EC:5.3.1.26)
Galactose-6-phosphate isomerase subunit lacA n=1 Tax=Enterococcus pallens ATCC BAA-351 RepID=R2QQW3_9ENTE
NECEvent2014_6_7_scaffold_351_16
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16389..18635)
DNA (2247bp) protein (749aa)
Glycosyl hydrolase family 98 family protein n=1 Tax=Streptococcus mitis SK597 RepID=E1LUY5_STRMT rbh
Glycosyl hydrolase family 98 family protein {ECO:0000313|EMBL:EFN99714.1}; TaxID=585204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcu
putative exported glycosyl hydrolase
NECEvent2014_6_7_scaffold_351_17
Streptococcus pneumoniae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18673..20979)
DNA (2307bp) protein (769aa)
Uncharacterized protein n=15 Tax=Streptococcus pneumoniae RepID=J1RIZ5_STREE rbh
Large secreted protein {ECO:0000313|EMBL:CRF95758.1}; TaxID=1313 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus pneumoniae.;"
hypothetical protein
NECEvent2014_6_7_scaffold_351_18
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21029..21838)
DNA (810bp) protein (270aa)
Mannose-specific phosphotransferase system (PTS), IID component n=1 Tax=Streptococcus suis D9 RepID=G7S7K5_STRSU rbh
PTS system mannose/fructose/sorbose IID component family protein {ECO:0000313|EMBL:KEQ43813.1}; TaxID=28037 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;"
manN; mannose-specific phosphotransferase system (PTS), IID component
NECEvent2014_6_7_scaffold_351_19
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21835..22620)
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WHY8_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EGX71563.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei
PTS sorbose-specific transporter subunit IIC
NECEvent2014_6_7_scaffold_351_20
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22656..23126)
DNA (471bp) protein (157aa)
PTS system mannose-specific EIIAB component {ECO:0000313|EMBL:EFN99717.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFN99717.1};; TaxID=585204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococc
PTS system sorbose subfamily IIB component n=2 Tax=Streptococcus suis RepID=G7S7K7_STRSU
PTS system sorbose subfamily transporter subunit IIB
NECEvent2014_6_7_scaffold_351_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23117..23554)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL3_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB80026.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_6_7_scaffold_351_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23563..24216)
DNA (654bp) protein (218aa)
fucA; L-fuculose phosphate aldolase (EC:4.1.2.17)
L-fuculose-phosphate aldolase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL4_CLOPE rbh
L-fuculose-phosphate aldolase {ECO:0000313|EMBL:BAB80025.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (stra
NECEvent2014_6_7_scaffold_351_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24252..26039)
DNA (1788bp) protein (596aa)
L-fucose isomerase {ECO:0000255|HAMAP-Rule:MF_01254}; EC=5.3.1.25 {ECO:0000255|HAMAP-Rule:MF_01254};; 6-deoxy-L-galactose isomerase {ECO:0000255|HAMAP-Rule:MF_01254}; FucIase; TaxID=195102 species="Ba
fucI; L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=FUCI_CLOPE rbh
NECEvent2014_6_7_scaffold_351_24
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26064..26489)
DNA (426bp) protein (142aa)
High affinity ribose transport protein rbsD n=1 Tax=Streptococcus mitis SK597 RepID=E1LUY9_STRMT
High affinity ribose transport protein rbsD {ECO:0000313|EMBL:EFN99718.1}; TaxID=585204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcu
ribose ABC transporter membrane protein
NECEvent2014_6_7_scaffold_351_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26503..27906)
DNA (1404bp) protein (468aa)
Rhamnulokinase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL6_CLOPE rbh
fucK; rhamnulokinase
Rhamnulokinase {ECO:0000313|EMBL:BAB80023.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A)
NECEvent2014_6_7_scaffold_351_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28090..28872
DNA (783bp) protein (261aa)
Probable transcriptional regulator n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL7_CLOPE rbh
transcriptional regulator
Probable transcriptional regulator {ECO:0000313|EMBL:BAB80022.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens
NECEvent2014_6_7_scaffold_351_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28944..29126)
DNA (183bp) protein (61aa)
Riboflavin biosynthesis protein RibD C-domain protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J3X8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ88729.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
dihydrofolate reductase family protein
NECEvent2014_6_7_scaffold_351_28
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29403..29588
DNA (186bp) protein (62aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TWY8_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EKQ51552.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
ECF subfamily RNA polymerase sigma-24 factor
Displaying 28 items

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