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NECEvent2014_6_7_scaffold_1231

Alias: 176_007_scaffold_1231

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_7_scaffold_1231_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(65..1258)
DNA (1194bp) protein (398aa)
Transposase Int-Tn n=2 Tax=Clostridium difficile RepID=T3IDM4_CLODI rbh
Integrase {ECO:0000313|EMBL:CDF47256.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium
Site-specific recombinase XerD
NECEvent2014_6_7_scaffold_1231_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1337..1543)
DNA (207bp) protein (69aa)
Excisionase n=1 Tax=Clostridium difficile RepID=V5ZEM7_CLODI
Excisionase {ECO:0000313|EMBL:CDF47257.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridi
Excisionase from transposon Tn916.
NECEvent2014_6_7_scaffold_1231_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1536..2678)
DNA (1143bp) protein (381aa)
Helix-turn-helix family protein n=2 Tax=Clostridium difficile RepID=T3IIH6_CLODI rbh
Putative topoisomerase {ECO:0000313|EMBL:CDF47258.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
hypothetical protein
NECEvent2014_6_7_scaffold_1231_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3205..3825
DNA (621bp) protein (207aa)
DNA-binding helix-turn-helix protein n=11 Tax=Firmicutes RepID=E2SHM4_9FIRM rbh
Transcriptional regulator, PbsX family {ECO:0000313|EMBL:EGB93684.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;
Transcriptional regulator
NECEvent2014_6_7_scaffold_1231_5
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4167..4802
DNA (636bp) protein (212aa)
Putative TetR family transcriptional regulator n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SBM9_9FIRM rbh
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:CDC58563.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" s
putative TetR family transcriptional regulator
NECEvent2014_6_7_scaffold_1231_6
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4909..6147
DNA (1239bp) protein (413aa)
Major facilitator superfamily transporter n=9 Tax=Firmicutes RepID=R6ST56_9FIRM rbh
Major facilitator superfamily transporter {ECO:0000313|EMBL:CDC58561.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source
macrolide-efflux protein
NECEvent2014_6_7_scaffold_1231_7
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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6374..6793
DNA (420bp) protein (140aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Firmicutes RepID=R2DPH9_ENTFC
Sigma-70 region 4 {ECO:0000313|EMBL:CDC58559.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans
putative conjugative transposon
NECEvent2014_6_7_scaffold_1231_8
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6798..7037
DNA (240bp) protein (80aa)
Uncharacterized protein n=13 Tax=Firmicutes RepID=E2SHM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW05226.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp.
putative conjugative transposon protein
Displaying 8 items

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