ggKbase home page

NECEvent2014_6_7_scaffold_288

Alias: 176_007_scaffold_288

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_7_scaffold_288_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..284)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UXE8_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL07747.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_6_7_scaffold_288_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

448..3540
DNA (3093bp) protein (1031aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MU74_CLOSA rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43216.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM
NECEvent2014_6_7_scaffold_288_3
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3579..7025)
DNA (3447bp) protein (1149aa)
pyc; Pyruvate carboxylase (EC:6.4.1.1)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594, ECO:0000313|EMBL:CDM68204.1}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594, ECO:0000313|EMBL:CDM68204.1};; TaxID=1216932 species="Bacteria; Firmicutes
Pyruvate carboxylase Pyc n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRI0_CLOSA
NECEvent2014_6_7_scaffold_288_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7140..8822)
DNA (1683bp) protein (561aa)
diguanylate cyclase n=1 Tax=Clostridium botulinum RepID=UPI00036BB512
Ggdef/hd domain protein {ECO:0000313|EMBL:EES48569.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT
ggdef/hd domain protein
NECEvent2014_6_7_scaffold_288_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8882..9007)
DNA (126bp) protein (42aa)
Putative lipoprotein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UWF5_CLOBO
Putative lipoprotein {ECO:0000313|EMBL:EES48056.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E
putative autoinducer prepeptide
NECEvent2014_6_7_scaffold_288_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9041..9658)
DNA (618bp) protein (206aa)
Putative accessory gene regulator protein B n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UWF6_CLOBO
Putative accessory gene regulator protein B {ECO:0000313|EMBL:EES49075.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bot
accessory gene regulator B superfamily
NECEvent2014_6_7_scaffold_288_7
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9646..10113)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QLB1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY28337.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
NECEvent2014_6_7_scaffold_288_8
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10113..10667)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QK48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY28338.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
NECEvent2014_6_7_scaffold_288_9
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10864..12096)
DNA (1233bp) protein (411aa)
yrrO; protease YrrO (EC:3.4.-.-)
Peptidase, U32 family n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QK24_9CLOT rbh
Peptidase, U32 family {ECO:0000313|EMBL:EKY28339.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
NECEvent2014_6_7_scaffold_288_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12173..12700)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MR41_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43070.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM
NECEvent2014_6_7_scaffold_288_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12841..14238)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EKF3_CLOPA
ErfK/YbiS/YcfS/YnhG family protein
ErfK family protein {ECO:0000313|EMBL:AJH01149.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP)
NECEvent2014_6_7_scaffold_288_12
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14425..15348
DNA (924bp) protein (308aa)
glycoside hydrolase n=1 Tax=Clostridium botulinum RepID=UPI0002E66264 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKQ57289.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp.
NECEvent2014_6_7_scaffold_288_13
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15345..16436
DNA (1092bp) protein (364aa)
Putative amidase domain-containing protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N036_9CLOT
putative amidase domain-containing protein
Putative amidase domain-containing protein {ECO:0000313|EMBL:AGF56957.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sacc
NECEvent2014_6_7_scaffold_288_14
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16472..17758)
DNA (1287bp) protein (429aa)
ABC transporter permease n=1 Tax=Clostridium intestinale URNW RepID=U2Q3R5_9CLOT
ABC transporter permease {ECO:0000313|EMBL:ERK30724.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
putative membrane protein
NECEvent2014_6_7_scaffold_288_15
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17768..18961)
DNA (1194bp) protein (398aa)
ABC transporter, ATP binding-protein n=3 Tax=Clostridium acetobutylicum RepID=F0KDS6_CLOAE rbh
ABC transporter, ATP binding-protein
ABC transporter, ATP binding-protein {ECO:0000313|EMBL:AAK78147.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutyl
NECEvent2014_6_7_scaffold_288_16
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19097..20167)
DNA (1071bp) protein (357aa)
Transcriptional regulator, ArsR family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KMX8_CLOPH
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX42989.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (str
NECEvent2014_6_7_scaffold_288_17
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20195..21754)
DNA (1560bp) protein (520aa)
Two component transcriptional regulator, arac family protein n=1 Tax=Clostridium intestinale URNW RepID=U2Q0M7_9CLOT rbh
Two component transcriptional regulator, arac family protein {ECO:0000313|EMBL:ERK32325.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
AraC; AraC family transcriptional regulator
NECEvent2014_6_7_scaffold_288_18
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22096..22428)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY25484.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
thioredoxin domain-containing protein
NECEvent2014_6_7_scaffold_288_19
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22431..22895)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BUP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR20752.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
NECEvent2014_6_7_scaffold_288_20
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22991..23500
DNA (510bp) protein (170aa)
Copper/zinc superoxide dismutase n=2 Tax=Clostridiales RepID=B0A9Z5_9FIRM
Copper/zinc superoxide dismutase {ECO:0000313|EMBL:EDQ96553.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter
sodC; copper/zinc superoxide dismutase
NECEvent2014_6_7_scaffold_288_21
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23526..24731)
DNA (1206bp) protein (402aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:00002
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine-tRNA ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HD37_9CLOT
NECEvent2014_6_7_scaffold_288_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25311..25979
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO62747.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753
hypothetical protein
NECEvent2014_6_7_scaffold_288_23
Helcococcus kunzii, Helcococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26011..27093)
DNA (1083bp) protein (361aa)
ABC transporter ATP-binding protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFF42 rbh
Uncharacterized protein {ECO:0000313|EMBL:EHR34065.1}; TaxID=883114 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Helcococcus.;" source="Helcococcus kunzii ATCC 51366.;"
ABC transporter ATP-binding protein
NECEvent2014_6_7_scaffold_288_24
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27106..28002)
DNA (897bp) protein (299aa)
sugar ABC transporter permease n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFF43 rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:ETA79889.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232
binding-protein-dependent transport system innermembrane protein
NECEvent2014_6_7_scaffold_288_25
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28005..30092)
DNA (2088bp) protein (696aa)
Sugar ABC transporter permease n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I1Y7_9CLOT rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:ETA79888.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232
sugar ABC transporter permease
NECEvent2014_6_7_scaffold_288_26
Peptostreptococcaceae bacterium oral taxon 113, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30108..30593)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2L707_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ85214.1}; TaxID=1321784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium oral tax
NECEvent2014_6_7_scaffold_288_27
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(30657..30857)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Treponema denticola OTK RepID=M2BI07_TREDN
sugar ABC transporter substrate-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EMB25558.1}; TaxID=999437 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola SP33.;"
NECEvent2014_6_7_scaffold_288_28
Anaerococcus prevotii, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30951..31952)
DNA (1002bp) protein (334aa)
Extracellular solute-binding protein family 1 n=1 Tax=Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) RepID=C7RFC0_ANAPD rbh
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ACV28181.1}; Flags: Precursor;; TaxID=525919 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;"
NECEvent2014_6_7_scaffold_288_29
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32013..34388)
DNA (2376bp) protein (792aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ru
Phosphorylase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UHW4_RUMA7 rbh
glycogen/starch/alpha-glucan phosphorylase
NECEvent2014_6_7_scaffold_288_30
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34406..35470)
DNA (1065bp) protein (355aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:
Putative=4-alpha-glucanotransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FBH8_9CLOT
malQ; 4-alpha-glucanotransferase
Displaying 30 items

View Taxonomy