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NECEvent2014_6_7_scaffold_54

Alias: 176_007_scaffold_54

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_7_scaffold_54_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..189)
DNA (189bp) protein (63aa)
UPI0003D5BD02 related cluster n=1 Tax=unknown RepID=UPI0003D5BD02
Uncharacterized protein {ECO:0000313|EMBL:ETI88530.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein
NECEvent2014_6_7_scaffold_54_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(183..737)
DNA (555bp) protein (185aa)
UPI0003D61B2D related cluster n=1 Tax=unknown RepID=UPI0003D61B2D rbh
Uncharacterized protein {ECO:0000313|EMBL:ETI88529.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein
NECEvent2014_6_7_scaffold_54_trna_2
unknown

Not on your lists

comp(998..1080)
DNA (83bp)
transferRNA
NECEvent2014_6_7_scaffold_54_3
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1199..1822)
DNA (624bp) protein (208aa)
Membrane-bound lytic murein transglycosylase D {ECO:0000313|EMBL:KJZ96932.1}; EC=3.2.1.- {ECO:0000313|EMBL:KJZ96932.1};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostri
Secreted protein n=4 Tax=Clostridium butyricum RepID=B1QVS7_CLOBU rbh
soluble lytic murein transglycosylase
NECEvent2014_6_7_scaffold_54_4
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1837..2436)
DNA (600bp) protein (200aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1523156 species="Bacteria; F
coaE; dephospho-CoA kinase CoaE (EC:2.7.1.24)
Dephospho-CoA kinase n=3 Tax=Clostridium butyricum RepID=B1QVS8_CLOBU rbh
NECEvent2014_6_7_scaffold_54_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2574..5444)
DNA (2871bp) protein (957aa)
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=2 Tax=Clostridium butyricum RepID=R0AHE8_CLOBU rbh
DNA polymerase I {ECO:0000313|EMBL:ENZ35778.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_6_7_scaffold_54_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5652..6878
DNA (1227bp) protein (409aa)
Aminopeptidase S (Leu, Val, Phe, Tyr preference) {ECO:0000313|EMBL:KJZ83190.1}; EC=3.4.11.24 {ECO:0000313|EMBL:KJZ83190.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clo
ampS; aminopeptidase AmpS (EC:3.4.11.-)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AUT7_CLOBU rbh
NECEvent2014_6_7_scaffold_54_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7011..7466)
DNA (456bp) protein (152aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1QVT1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83207.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_6_7_scaffold_54_trna_1
unknown

Not on your lists

comp(7739..7810)
DNA (72bp)
transferRNA
NECEvent2014_6_7_scaffold_54_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8034..9227)
DNA (1194bp) protein (398aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
isocitrate dehydrogenase (EC:1.1.1.42)
UPI0003D61092 related cluster n=1 Tax=unknown RepID=UPI0003D61092 rbh
NECEvent2014_6_7_scaffold_54_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9395..10402)
DNA (1008bp) protein (336aa)
Membrane protein n=2 Tax=Clostridium butyricum RepID=M8J819_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35769.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
membrane protein
NECEvent2014_6_7_scaffold_54_10
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10689..11567)
DNA (879bp) protein (293aa)
Transcriptional regulator, LysR family n=2 Tax=Clostridium butyricum RepID=M8KBY7_CLOBU rbh
Transcriptional regulator, MerR family {ECO:0000313|EMBL:KJZ83238.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBU
LysR family transcriptional regulator
NECEvent2014_6_7_scaffold_54_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11589..11720)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K3Q1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP54958.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
NECEvent2014_6_7_scaffold_54_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11729..12016)
DNA (288bp) protein (96aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1QVT6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83274.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_6_7_scaffold_54_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12530..13942
DNA (1413bp) protein (471aa)
mannan endo-1,4-beta-mannosidase (Beta-mannanase) (1,4-beta-D-mannan mannanohydrolase) (EC:3.2.1.78)
Mannan endo-1,4-beta-mannosidase (Beta-mannanase) (1,4-beta-D-mannan mannanohydrolase) n=2 Tax=Clostridium butyricum RepID=C4IH24_CLOBU rbh
Beta-1,4-mannanase {ECO:0000313|EMBL:KJZ83188.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
NECEvent2014_6_7_scaffold_54_14
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14055..15527)
DNA (1473bp) protein (491aa)
Glutamate synthase NADPH small chain {ECO:0000313|EMBL:KJZ83303.1}; EC=1.4.1.13 {ECO:0000313|EMBL:KJZ83303.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Glutamate synthase, NADH/NADPH, small subunit n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z7U5_CLOBU rbh
glutamate synthase, NADH/NADPH, small subunit
NECEvent2014_6_7_scaffold_54_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15542..20122)
DNA (4581bp) protein (1527aa)
Glutamate synthase, NADPH, large subunit {ECO:0000313|EMBL:EEP54279.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EEP54279.1};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
gltB1; ferredoxin-dependent glutamate synthase 1 (EC:1.4.7.1)
Glutamate synthase [NADPH] large chain n=2 Tax=Clostridium butyricum RepID=B1QYX7_CLOBU rbh
NECEvent2014_6_7_scaffold_54_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20395..20955)
DNA (561bp) protein (187aa)
Nitrogen regulator n=4 Tax=Clostridium butyricum RepID=B1QYX6_CLOBU rbh
Ethanolamine two-component response regulator {ECO:0000313|EMBL:KJZ83276.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium
nitR; nitrogen assimilation antiterminator protein NitR
NECEvent2014_6_7_scaffold_54_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20994..22325)
DNA (1332bp) protein (444aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
glnA1; glutamine synthetase GlnA (EC:6.3.1.2)
Glutamine synthetase n=3 Tax=Clostridium butyricum RepID=B1QYX5_CLOBU rbh
NECEvent2014_6_7_scaffold_54_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22744..23103)
DNA (360bp) protein (120aa)
Nitrogen regulatory protein P-II n=4 Tax=Clostridium butyricum RepID=B1QYX4_CLOBU
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EEP53427.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 s
nitrogen regulatory protein P-II
NECEvent2014_6_7_scaffold_54_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23248..24501)
DNA (1254bp) protein (418aa)
Ammonium transporter n=3 Tax=Clostridium butyricum RepID=B1QYX3_CLOBU rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
putative ammonium transporter sll0108
NECEvent2014_6_7_scaffold_54_20
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25182..26495
DNA (1314bp) protein (438aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
Aspartokinase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ASP6_CLOBU rbh
aspartate kinase
NECEvent2014_6_7_scaffold_54_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26601..27152)
DNA (552bp) protein (184aa)
Transposase and inactivated derivative n=3 Tax=Clostridium butyricum RepID=B1QXV3_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35758.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
transposase IS200-family protein
NECEvent2014_6_7_scaffold_54_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27240..31265)
DNA (4026bp) protein (1342aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AUS1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83236.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
chlD; Mg-chelatase subunit ChlD
NECEvent2014_6_7_scaffold_54_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31276..31896)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z7C3_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83283.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_6_7_scaffold_54_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31916..34240)
DNA (2325bp) protein (775aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z7T9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35755.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_6_7_scaffold_54_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34242..35063)
DNA (822bp) protein (274aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ASP5_CLOBU rbh
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:ENZ35754.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
prokaryotic N-methylation motif domain protein
NECEvent2014_6_7_scaffold_54_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35072..36349)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AHC8_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35753.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
pilO; type IV pilus assembly protein PilO
NECEvent2014_6_7_scaffold_54_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36352..36909)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AUR8_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35752.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
pilN; Tfp pilus assembly protein PilN
NECEvent2014_6_7_scaffold_54_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36926..38158)
DNA (1233bp) protein (411aa)
Type IV pilus assembly protein PilM n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z7B9_CLOBU rbh
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:ENZ35751.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 6
pilM; type IV pilus assembly protein PilM
Displaying items 1-30 of 75 in total

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