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NECEvent2014_6_7_scaffold_562

Alias: 176_007_scaffold_562

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_7_scaffold_562_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(124..1509)
DNA (1386bp) protein (462aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuram
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=4 Tax=Clostridium butyricum RepID=B1R1U8_CLOBU rbh
NECEvent2014_6_7_scaffold_562_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1981..2796
DNA (816bp) protein (272aa)
Adenine phosphoribosyltransferase {ECO:0000313|EMBL:KJZ84700.1}; EC=2.4.2.7 {ECO:0000313|EMBL:KJZ84700.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
Pur operon repressor n=4 Tax=Clostridium butyricum RepID=B1R1U7_CLOBU rbh
pur operon repressor
NECEvent2014_6_7_scaffold_562_3

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3005..3280
DNA (276bp) protein (92aa)
Putative septation protein SpoVG n=2 Tax=Clostridium butyricum RepID=B1R1U6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETJ16537.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
SpoVG family protein
NECEvent2014_6_7_scaffold_562_4

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3504..4874
DNA (1371bp) protein (457aa)
glmU: bifunctional protein GlmU (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU n=4 Tax=Clostridium butyricum RepID=B1R1U5_CLOBU rbh
Bifunctional protein GlmU {ECO:0000313|EMBL:ETJ16536.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_7_scaffold_562_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4922..5887
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase n=2 Tax=Clostridium butyricum RepID=B1R1U4_CLOBU rbh
ribose-phosphate pyrophosphokinase
NECEvent2014_6_7_scaffold_562_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5994..6680
DNA (687bp) protein (229aa)
Transcriptional regulatory protein ResD n=4 Tax=Clostridium butyricum RepID=B1R1U3_CLOBU rbh
Transcriptional regulatory protein ResD {ECO:0000313|EMBL:EEP52495.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyric
srrA1; transcriptional regulatory protein SrrA
NECEvent2014_6_7_scaffold_562_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6681..8102
DNA (1422bp) protein (474aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AA33_CLOBU rbh
integral membrane sensor signal transduction histidine kinase
NECEvent2014_6_7_scaffold_562_8
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8138..8713
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=2 Tax=Clostridium butyricum RepID=M8JG12_CLOBU rbh
NECEvent2014_6_7_scaffold_562_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8728..12228
DNA (3501bp) protein (1167aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=997898 species="Bacteria; Fi
mfd; transcription-repair-coupling factor Mfd (EC:3.6.4.-)
Transcription-repair-coupling factor n=2 Tax=Clostridium butyricum RepID=M8JEP6_CLOBU rbh
NECEvent2014_6_7_scaffold_562_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12354..13385
DNA (1032bp) protein (344aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
prsA1; foldase protein PrsA (EC:5.2.1.8)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9YPN4_CLOBU rbh
NECEvent2014_6_7_scaffold_562_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13591..14142
DNA (552bp) protein (184aa)
Stage V sporulation protein T n=4 Tax=Clostridium butyricum RepID=B1R1T8_CLOBU rbh
Stage V sporulation protein T {ECO:0000313|EMBL:ENZ29600.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;
spoVT; stage V sporulation protein T
NECEvent2014_6_7_scaffold_562_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14267..15805
DNA (1539bp) protein (513aa)
Stage V sporulation protein B n=3 Tax=Clostridium butyricum RepID=B1R1T7_CLOBU rbh
Putative stage V sporulation protein B {ECO:0000313|EMBL:EEP52558.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricu
spoVB1; stage V sporulation protein B
NECEvent2014_6_7_scaffold_562_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15821..17272
DNA (1452bp) protein (484aa)
MazG family protein n=4 Tax=Clostridium butyricum RepID=B1R1T6_CLOBU rbh
MazG family protein {ECO:0000313|EMBL:ENZ29598.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
MazG family protein
NECEvent2014_6_7_scaffold_562_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17490..17765
DNA (276bp) protein (92aa)
DNA-binding protein HU n=5 Tax=Clostridium RepID=U5MP25_CLOSA
hup; DNA-binding protein HU
DNA-binding protein HU {ECO:0000313|EMBL:ENZ29597.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_6_7_scaffold_562_15
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17830..18090
DNA (261bp) protein (87aa)
S4 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1T4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84737.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
NECEvent2014_6_7_scaffold_562_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18269..18562
DNA (294bp) protein (98aa)
Sporulation protein YabP n=4 Tax=Clostridium butyricum RepID=B1R1T3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84738.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
YabP family protein
NECEvent2014_6_7_scaffold_562_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18572..18967
DNA (396bp) protein (132aa)
Spore cortex biosynthesis protein YabQ n=3 Tax=Clostridium butyricum RepID=B1R1T2_CLOBU
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:ENZ29594.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricu
yabQ; spore cortex biosynthesis protein YabQ
NECEvent2014_6_7_scaffold_562_18
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19041..19337
DNA (297bp) protein (99aa)
Septum formation initiator n=2 Tax=Clostridium butyricum RepID=M8JG03_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83344.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
septum formation initiator
NECEvent2014_6_7_scaffold_562_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19478..19882
DNA (405bp) protein (135aa)
RNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1R1T0_CLOBU
RNA binding protein, contains ribosomal protein S1 domain {ECO:0000313|EMBL:KJZ84730.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
RNA binding protein
NECEvent2014_6_7_scaffold_562_trna_1
unknown

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20113..20198
DNA (86bp)
transferRNA
NECEvent2014_6_7_scaffold_562_trna_2
unknown

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20223..20295
DNA (73bp)
transferRNA
NECEvent2014_6_7_scaffold_562_trna_3
unknown

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20304..20377
DNA (74bp)
transferRNA
Displaying 22 items

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