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NECEvent2014_7_2_scaffold_186

Alias: 177_002_scaffold_186

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_7_2_scaffold_186_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..82
DNA (81bp) protein (27aa)
Putative transposase (Fragment) n=1 Tax=Escherichia coli 2872000 RepID=M8TDC4_ECOLX
insB-12; IS1 protein InsB
Putative transposase {ECO:0000313|EMBL:KDX46431.1}; TaxID=1444151 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli
NECEvent2014_7_2_scaffold_186_2
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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84..716
DNA (633bp) protein (211aa)
MltA-interacting MipA family protein n=6 Tax=Escherichia coli RepID=H5L0C0_ECOLX rbh
putative outer membrane protein
Putative outer membrane protein yiaT {ECO:0000313|EMBL:CDK69395.1}; TaxID=1432547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="K
NECEvent2014_7_2_scaffold_186_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1063..1758)
DNA (696bp) protein (232aa)
L-ribulose-5-phosphate 4-epimerase AraD n=12 Tax=Escherichia coli RepID=F4M705_ECOLX rbh
araD; L-ribulose-5-phosphate 4-epimerase AraD rbh
L-ribulose-5-phosphate 4-epimerase SgbE {ECO:0000313|EMBL:ELC13658.1}; TaxID=1169330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" sourc
NECEvent2014_7_2_scaffold_186_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1752..2612)
DNA (861bp) protein (287aa)
Hexulose-6-phosphate isomerase n=271 Tax=Enterobacteriaceae RepID=C6EE97_ECOBD rbh
Putative hexulose-6-phosphate isomerase {ECO:0000313|EMBL:EGI44160.1}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source
sgbU; L-xylulose 5-phosphate 3-epimerase
NECEvent2014_7_2_scaffold_186_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2605..3267)
DNA (663bp) protein (221aa)
sgbH; 3-keto-L-gulonate-6-phosphate decarboxylase (EC:4.1.1.85)
3-keto-L-gulonate 6-phosphate decarboxylase n=222 Tax=Escherichia coli RepID=B7L6Z7_ECO55 rbh
3-dehydro-L-gulonate-6-phosphate decarboxylase {ECO:0000313|EMBL:ESD27206.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;
NECEvent2014_7_2_scaffold_186_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3264..4760)
DNA (1497bp) protein (499aa)
L-xylulose/3-keto-L-gulonate kinase {ECO:0000313|EMBL:EIG91161.1}; EC=2.7.1.- {ECO:0000313|EMBL:EIG91161.1};; EC=2.7.1.53 {ECO:0000313|EMBL:EIG91161.1};; TaxID=869670 species="Bacteria; Proteobacteria
L-xylulose/3-keto-L-gulonate kinase n=1 Tax=Escherichia coli 97.0246 RepID=I2RT45_ECOLX rbh
L-xylulose/3-keto-L-gulonate kinase
NECEvent2014_7_2_scaffold_186_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4764..5750)
DNA (987bp) protein (329aa)
2,3-diketo-L-gulonate-binding periplasmic protein YiaO n=163 Tax=Escherichia RepID=YIAO_ECOLI rbh
yiaO; yiaO, subunit of YiaMNO Binding Protein-dependent Secondary (TRAP) Transporter
2,3-diketo-L-gulonate-binding periplasmic protein yiaO {ECO:0000313|EMBL:CDK84485.1}; TaxID=1432548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Esche
NECEvent2014_7_2_scaffold_186_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5763..7040)
DNA (1278bp) protein (426aa)
2,3-diketo-L-gulonate TRAP transporter large permease protein YiaN n=445 Tax=Enterobacteriaceae RepID=YIAN_ECOLI rbh
TRAP dicarboxylate transporter DctM subunit
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EFJ95841.1}; TaxID=749537 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escheri
NECEvent2014_7_2_scaffold_186_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7043..7516)
DNA (474bp) protein (158aa)
2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM n=3 Tax=Escherichia coli RepID=H9UYD1_ECOLX rbh
yiaM; 2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM rbh
2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM {ECO:0000313|EMBL:AFG42524.1}; TaxID=910348 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteria
NECEvent2014_7_2_scaffold_186_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7634..8101)
DNA (468bp) protein (156aa)
Uncharacterized protein n=46 Tax=Escherichia coli RepID=B2N787_ECOLX rbh
yiaL; beta-galactosidase
Uncharacterized protein {ECO:0000313|EMBL:EMX82550.1}; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c
NECEvent2014_7_2_scaffold_186_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8113..9111)
DNA (999bp) protein (333aa)
2,3-diketo-L-gulonate reductase {ECO:0000256|HAMAP-Rule:MF_00820}; Short=2,3-DKG reductase {ECO:0000256|HAMAP-Rule:MF_00820};; EC=1.1.1.130 {ECO:0000256|HAMAP-Rule:MF_00820};; 3-dehydro-L-gulonate 2-d
2,3-diketo-L-gulonate reductase n=167 Tax=Escherichia RepID=DLGD_ECOBW rbh
yiaK; 2,3-diketo-L-gulonate reductase
NECEvent2014_7_2_scaffold_186_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9312..10160
DNA (849bp) protein (283aa)
HTH-type transcriptional regulator YiaJ n=183 Tax=Escherichia RepID=YIAJ_ECOLI rbh
yiaJ; putative DNA-binding transcriptional repressor
HTH-type transcriptional regulator yiaJ {ECO:0000313|EMBL:ELD95776.1}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" sourc
NECEvent2014_7_2_scaffold_186_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10262..10735
DNA (474bp) protein (158aa)
4Fe-4S binding domain protein n=32 Tax=Escherichia coli RepID=A8A632_ECOHS rbh
4Fe-4S ferredoxin
Electron transport protein hydN {ECO:0000313|EMBL:ENC89046.1}; TaxID=1116072 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esche
NECEvent2014_7_2_scaffold_186_14
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10886..12139)
DNA (1254bp) protein (418aa)
avtA; valine--pyruvate transaminase (EC:2.6.1.66)
Valine--pyruvate aminotransferase {ECO:0000313|EMBL:EFW50948.1}; EC=2.6.1.66 {ECO:0000313|EMBL:EFW50948.1};; TaxID=941429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Ent
Valine--pyruvate transaminase n=2 Tax=Shigella flexneri RepID=I0VJ91_SHIFL rbh
NECEvent2014_7_2_scaffold_186_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12317..14347)
DNA (2031bp) protein (677aa)
Alpha-amylase {ECO:0000313|EMBL:AJF58370.1}; EC=3.2.1.1 {ECO:0000313|EMBL:AJF58370.1};; TaxID=745156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Esch
Alpha-amylase n=127 Tax=Escherichia RepID=AMY1_ECOLI rbh
malS; periplasmic alpha-amylase
NECEvent2014_7_2_scaffold_186_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14667..15491
DNA (825bp) protein (275aa)
Protein bax n=1265 Tax=Enterobacteriaceae RepID=BAX_ECOLI rbh
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
Bax protein {ECO:0000313|EMBL:ELI21021.1}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;
NECEvent2014_7_2_scaffold_186_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15687..16865)
DNA (1179bp) protein (393aa)
Xylose operon regulatory protein n=1170 Tax=Enterobacteriaceae RepID=XYLR_ECO57 rbh
AraC family transcriptional regulator
Xylose operon regulatory protein {ECO:0000313|EMBL:EOV53591.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esch
NECEvent2014_7_2_scaffold_186_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16943..18124)
DNA (1182bp) protein (394aa)
Xylose transport system permease protein XylH n=1077 Tax=Enterobacteriaceae RepID=XYLH_ECO57 rbh
xylH; Xylose ABC transporter, membrane component XylH
Inner-membrane translocator {ECO:0000313|EMBL:ADX48822.1}; TaxID=595495 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichi
NECEvent2014_7_2_scaffold_186_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18102..19643)
DNA (1542bp) protein (514aa)
Xylose import ATP-binding protein XylG {ECO:0000256|HAMAP-Rule:MF_01722}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01722};; TaxID=1269007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enteroba
D-xylose ABC transporter, ATP-binding protein n=324 Tax=Escherichia RepID=A7ZTB4_ECO24 rbh
xylose transporter ATP-binding subunit
NECEvent2014_7_2_scaffold_186_20
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19721..20713)
DNA (993bp) protein (331aa)
D-xylose transporter subunit XylF n=141 Tax=Enterobacteriaceae RepID=I0VJ95_SHIFL rbh
xylF; Xylose binding protein transport system
Xylose binding protein transport system {ECO:0000313|EMBL:ABF05980.1}; TaxID=373384 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="S
NECEvent2014_7_2_scaffold_186_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21079..22401
DNA (1323bp) protein (441aa)
xylose isomerase (EC:5.3.1.5)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=868140 species="Bacteria; Proteob
Xylose isomerase n=678 Tax=Enterobacteriaceae RepID=XYLA_ECO27 rbh
NECEvent2014_7_2_scaffold_186_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22473..23927
DNA (1455bp) protein (485aa)
xylB; xylulokinase (EC:2.7.1.17 2.7.1.-)
Xylulokinase {ECO:0000313|EMBL:KEN45043.1}; EC=2.7.1.17 {ECO:0000313|EMBL:KEN45043.1};; TaxID=1444091 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Esc
Xylulokinase n=50 Tax=Escherichia coli RepID=A8A622_ECOHS rbh
NECEvent2014_7_2_scaffold_186_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24096..24437
DNA (342bp) protein (114aa)
Inner membrane protein YiaB n=184 Tax=Escherichia RepID=YIAB_ECOLI
yiaB; hypothetical protein
Inner membrane protein yiaB {ECO:0000313|EMBL:KDY51069.1}; TaxID=1444126 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherich
NECEvent2014_7_2_scaffold_186_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24483..24920
DNA (438bp) protein (146aa)
Uncharacterized protein n=15 Tax=Enterobacteriaceae RepID=C3SN52_ECOLX
YiaAB two helix domain-containing protein
YiaA/B two helix domain protein {ECO:0000313|EMBL:ESD65609.1}; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esche
NECEvent2014_7_2_scaffold_186_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24962..25957)
DNA (996bp) protein (332aa)
Acyltransferase 3 n=41 Tax=Escherichia coli RepID=B1IZN1_ECOLC rbh
yiaH; inner membrane protein
Inner membrane protein YiaH {ECO:0000313|EMBL:EOW18467.1}; TaxID=1182703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherich
NECEvent2014_7_2_scaffold_186_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26132..26431
DNA (300bp) protein (100aa)
Uncharacterized lipoprotein YsaB n=115 Tax=Escherichia RepID=YSAB_ECOLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESE10623.1}; TaxID=1269003 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c
NECEvent2014_7_2_scaffold_186_27
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26526..27137
DNA (612bp) protein (204aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA syntheta
Glycine--tRNA ligase alpha subunit n=3 Tax=Escherichia coli RepID=N2YYC0_ECOLX
glyQ; glycyl-tRNA synthetase subunit alpha
Displaying 27 items

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