ggKbase home page

NECEvent2014_7_3_scaffold_82

Alias: 177_003_scaffold_82

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_7_3_scaffold_82_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..597
DNA (597bp) protein (199aa)
Hydrogenase expression/formation protein HypD n=1 Tax=Escherichia coli P0299438.6 RepID=N2YZW1_ECOLX
hypD; Hydrogenase metallocenter assembly protein
Hydrogenase isoenzymes formation protein hypD {ECO:0000313|EMBL:EOV71695.1}; TaxID=1182677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;"
NECEvent2014_7_3_scaffold_82_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

594..1604
DNA (1011bp) protein (337aa)
Hydrogenase isoenzymes formation protein HypE n=104 Tax=Escherichia RepID=HYPE_ECOLI rbh
carbamoyl dehydratase HypE
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:EMW99156.1}; TaxID=1125634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;"
NECEvent2014_7_3_scaffold_82_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1678..3756
DNA (2079bp) protein (693aa)
Formate hydrogenlyase transcriptional activator n=3 Tax=Enterobacteriaceae RepID=F4NJL2_9ENTR rbh
Formate hydrogenlyase transcriptional activator {ECO:0000313|EMBL:EMX48546.1}; TaxID=1116139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
fhlA; DNA-binding transcriptional activator
NECEvent2014_7_3_scaffold_82_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3793..4146)
DNA (354bp) protein (118aa)
Uncharacterized protein YgbA n=200 Tax=Escherichia RepID=YGBA_ECOLI
hypothetical protein
Nitrous oxide-stimulated promoter family protein {ECO:0000313|EMBL:ENB11740.1}; TaxID=1116036 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
NECEvent2014_7_3_scaffold_82_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4178..4357)
DNA (180bp) protein (60aa)
Uncharacterized protein n=252 Tax=Escherichia RepID=B2N1E4_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EII34457.1}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia co
NECEvent2014_7_3_scaffold_82_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4433..6994
DNA (2562bp) protein (854aa)
DNA mismatch repair protein MutS n=201 Tax=Enterobacteriaceae RepID=MUTS_ECO55 rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=475609 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteri
mutS; DNA mismatch repair protein MutS
NECEvent2014_7_3_scaffold_82_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7100..7756
DNA (657bp) protein (219aa)
Serine/threonine-protein phosphatase 2 {ECO:0000313|EMBL:ENB26862.1}; EC=3.1.3.16 {ECO:0000313|EMBL:ENB26862.1};; TaxID=1116116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriale
Serine/threonine protein phosphatase 2 n=129 Tax=Escherichia RepID=B2N1E2_ECOLX rbh
serine/threonine-specific protein phosphatase 2
NECEvent2014_7_3_scaffold_82_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7807..8574)
DNA (768bp) protein (256aa)
Uncharacterized HTH-type transcriptional regulator YgbI n=122 Tax=Escherichia RepID=YGBI_ECOLI rbh
ygbI; putative DNA-binding transcriptional regulator rbh
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EFJ96983.1}; TaxID=749537 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source=
NECEvent2014_7_3_scaffold_82_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8770..9678
DNA (909bp) protein (303aa)
NAD binding domain of 6-phosphogluconate dehydrogenase n=408 Tax=Enterobacteriaceae RepID=A7ZQH6_ECO24 rbh
dehydrogenase
Oxidoreductase {ECO:0000313|EMBL:EZE25848.1}; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O123:
NECEvent2014_7_3_scaffold_82_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9675..10937
DNA (1263bp) protein (421aa)
YgbK domain protein n=113 Tax=Escherichia RepID=A8A3L6_ECOHS rbh
Hrp-dependent type III effector protein rbh
Membrane protein {ECO:0000313|EMBL:AJB52801.1}; Putative tRNA synthase {ECO:0000313|EMBL:CDP74173.1}; Uncharacterized protein {ECO:0000313|EMBL:KGM82986.1}; TaxID=562 species="Bacteria; Proteobacteria
NECEvent2014_7_3_scaffold_82_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10934..11572
DNA (639bp) protein (213aa)
Putative aldolase class 2 protein YgbL n=592 Tax=Enterobacteriaceae RepID=YGBL_ECOLI rbh
ygbL; putative aldolase
Aldolase {ECO:0000313|EMBL:EZE25846.1}; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O123:H11 st
NECEvent2014_7_3_scaffold_82_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11577..12353
DNA (777bp) protein (259aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Entero
Putative hydroxypyruvate isomerase YgbM n=88 Tax=Escherichia coli RepID=YGBM_ECOLI rbh
putative endonuclease rbh
NECEvent2014_7_3_scaffold_82_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12442..13806
DNA (1365bp) protein (455aa)
Inner membrane permease YgbN n=95 Tax=Enterobacteriaceae RepID=YGBN_ECOLI rbh
ygbN; inner membrane permease YgbN
Inner membrane permease ygbN {ECO:0000313|EMBL:CEE04003.1}; Predicted transporter {ECO:0000313|EMBL:CDP74170.1}; Putative transporter {ECO:0000313|EMBL:AKF56545.1}; Transporter {ECO:0000313|EMBL:KIG53
NECEvent2014_7_3_scaffold_82_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13900..14892)
DNA (993bp) protein (331aa)
RNA polymerase sigma factor RpoS n=1 Tax=Escherichia coli HVH 107 (4-5860571) RepID=T6S6W0_ECOLX rbh
rpoS; RNA polymerase sigma factor RpoS
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=1116132 species="Bacteria; Proteobacter
NECEvent2014_7_3_scaffold_82_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14955..16094)
DNA (1140bp) protein (380aa)
Murein hydrolase activator NlpD n=1 Tax=Escherichia coli 07798 RepID=K3JGE8_ECOLX rbh
Murein hydrolase activator NlpD {ECO:0000313|EMBL:EZJ72449.1}; TaxID=1444191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esche
nlpD; lipoprotein NlpD
NECEvent2014_7_3_scaffold_82_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16234..16860)
DNA (627bp) protein (209aa)
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
Protein-L-isoaspartate O-methyltransferase n=1110 Tax=Enterobacteriaceae RepID=PIMT_ECO24 rbh
NECEvent2014_7_3_scaffold_82_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16854..17615)
DNA (762bp) protein (254aa)
stationary-phase survival protein SurE (EC:3.1.3.6)
5'/3'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; EC=3.1.3.6 {ECO:0000256|HAMAP-Rule:MF_00060};; Exopolyphosphatase {ECO:0000256|HAMAP-Rule:MF_0
5'/3'-nucleotidase SurE n=12 Tax=Escherichia RepID=B1LQ64_ECOSM rbh
NECEvent2014_7_3_scaffold_82_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17596..18645)
DNA (1050bp) protein (350aa)
truD; tRNA pseudouridine 13 synthase (EC:4.2.1.-) rbh
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylat
tRNA pseudouridine synthase D n=81 Tax=Enterobacteriaceae RepID=TRUD_SHIDS rbh
NECEvent2014_7_3_scaffold_82_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18642..19121)
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=9 Tax=Escherichia coli RepID=L2XFD4_ECOLX rbh
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphatesynthase
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {E
NECEvent2014_7_3_scaffold_82_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19121..19831)
DNA (711bp) protein (237aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=496 Tax=Enterobacteriaceae RepID=ISPD_ECO24 rbh
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NECEvent2014_7_3_scaffold_82_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19850..20161)
DNA (312bp) protein (104aa)
Cell division protein FtsB n=973 Tax=Enterobacteriaceae RepID=FTSB_ECO24
septum formation initiator
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=1444053 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae
NECEvent2014_7_3_scaffold_82_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20355..20678)
DNA (324bp) protein (108aa)
Inner membrane protein YgbE n=643 Tax=Enterobacteriaceae RepID=YGBE_ECOLI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EHW13932.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia
NECEvent2014_7_3_scaffold_82_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20728..21333)
DNA (606bp) protein (202aa)
cysC; adenylylsulfate kinase (EC:2.7.1.25) rbh
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-R
Adenylyl-sulfate kinase n=849 Tax=Gammaproteobacteria RepID=CYSC_ECO24 rbh
NECEvent2014_7_3_scaffold_82_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21333..22760)
DNA (1428bp) protein (476aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00055979};; ATP-sulfurylase la
Sulfate adenylyltransferase subunit 1 n=241 Tax=Enterobacteriaceae RepID=CYSN_ECO7I rbh
cysN; sulfate adenylyltransferase, subunit 1
NECEvent2014_7_3_scaffold_82_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22762..23670)
DNA (909bp) protein (303aa)
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenyla
Sulfate adenylyltransferase subunit 2 n=460 Tax=Enterobacteriaceae RepID=CYSD_ECO55 rbh
NECEvent2014_7_3_scaffold_82_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23922..24959
DNA (1038bp) protein (346aa)
Alkaline phosphatase isozyme conversion, aminopeptidase n=169 Tax=Enterobacteriaceae RepID=J7R4T7_ECOLX rbh
peptidase M28
M42 glutamyl aminopeptidase family protein {ECO:0000313|EMBL:KDU24926.1}; TaxID=1444251 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" so
Displaying 26 items

View Taxonomy