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NECEvent2014_8_1_Clostridium_paraputrificum_29_36

NECEvent2014_8_1_Clostridium_30_43
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

rpS3 100% to Clostridium paraputrificum

Displaying items 1-50 of 233 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_1993 178_001_scaffold_1993
Species: [Clostridium] hiranonis (50%)
2 2389 bp 24.32 8.04 68.19
NECEvent2014_8_1_scaffold_1580 178_001_scaffold_1580
Species: Clostridium perfringens (50%)
2 3004 bp 29.06 8.09 98.97
NECEvent2014_8_1_scaffold_4149 178_001_scaffold_4149
Species: Clostridium sp. CAG:356 (50%)
2 1118 bp 23.79 8.59 97.14
NECEvent2014_8_1_scaffold_3058 178_001_scaffold_3058
Species: Clostridium sp. CAG:221 (50%)
2 1530 bp 24.97 9.41 88.24
NECEvent2014_8_1_scaffold_3832 178_001_scaffold_3832 3 1212 bp 23.93 9.90 60.64
NECEvent2014_8_1_scaffold_4130 178_001_scaffold_4130
Species: Enterococcus columbae (50%)
2 1123 bp 24.04 10.15 69.72
NECEvent2014_8_1_scaffold_4383 178_001_scaffold_4383
Species: Clostridium baratii (50%)
2 1057 bp 23.65 10.22 96.22
NECEvent2014_8_1_scaffold_3487 178_001_scaffold_3487
Species: Clostridium saccharobutylicum (50%)
2 1340 bp 26.42 10.30 93.81
NECEvent2014_8_1_scaffold_2631 178_001_scaffold_2631 3 1787 bp 25.29 10.58 98.88
NECEvent2014_8_1_scaffold_3648 178_001_scaffold_3648
Species: Clostridium sartagoforme (100%)
1 1277 bp 23.02 11.51 95.14
NECEvent2014_8_1_scaffold_2821 178_001_scaffold_2821
Species: Clostridium sp. Maddingley MBC34-26 (50%)
2 1673 bp 25.52 11.75 99.16
NECEvent2014_8_1_scaffold_2177 178_001_scaffold_2177
Genus: Peptoclostridium (66.67%)
3 2182 bp 23.51 11.82 91.70
NECEvent2014_8_1_scaffold_3394 178_001_scaffold_3394
Species: Clostridium sp. 7_2_43FAA (100%)
1 1379 bp 24.87 12.29 99.86
NECEvent2014_8_1_scaffold_1976 178_001_scaffold_1976
Species: uncultured archaeon (50%)
2 2413 bp 25.32 12.68 98.47
NECEvent2014_8_1_scaffold_2742 178_001_scaffold_2742
Species: Clostridium botulinum (66.67%)
3 1719 bp 26.18 12.74 96.68
NECEvent2014_8_1_scaffold_1708 178_001_scaffold_1708
Genus: Clostridium (75%)
4 2774 bp 25.16 12.82 80.79
NECEvent2014_8_1_scaffold_1559 178_001_scaffold_1559
Order: Clostridiales (60%)
5 3051 bp 24.81 13.08 83.78
NECEvent2014_8_1_scaffold_1529 178_001_scaffold_1529
Species: Clostridium sulfidigenes (50%)
4 3110 bp 25.47 13.12 86.72
NECEvent2014_8_1_scaffold_1875 178_001_scaffold_1875
Genus: Clostridium (66.67%)
3 2535 bp 26.15 13.43 77.16
NECEvent2014_8_1_scaffold_2380 178_001_scaffold_2380
Species: Clostridium sp. IBUN125C (50%)
2 1968 bp 27.85 13.87 94.21
NECEvent2014_8_1_scaffold_2843 178_001_scaffold_2843
Species: Clostridium sp. Maddingley MBC34-26 (50%)
2 1661 bp 27.09 14.00 96.09
NECEvent2014_8_1_scaffold_886 178_001_scaffold_886
Genus: Clostridium (66.67%)
6 5269 bp 25.41 14.46 90.47
NECEvent2014_8_1_scaffold_1505 178_001_scaffold_1505
Species: Clostridium sp. BL8 (66.67%)
3 3164 bp 25.95 14.55 100.22
NECEvent2014_8_1_scaffold_4458 178_001_scaffold_4458
Species: Terrisporobacter othiniensis (50%)
2 1038 bp 25.53 14.74 91.33
NECEvent2014_8_1_scaffold_2650 178_001_scaffold_2650
Domain: Bacteria (66.67%)
3 1777 bp 25.38 14.94 84.75
NECEvent2014_8_1_scaffold_1283 178_001_scaffold_1283
Species: Clostridium acetobutylicum (75%)
4 3732 bp 26.21 15.31 99.68
NECEvent2014_8_1_scaffold_1693 178_001_scaffold_1693
Genus: Clostridium (66.67%)
3 2808 bp 26.75 15.33 79.49
NECEvent2014_8_1_scaffold_1352 178_001_scaffold_1352
Genus: Clostridium (60%)
5 3544 bp 26.38 15.49 90.41
NECEvent2014_8_1_scaffold_1560 178_001_scaffold_1560
Species: Clostridium botulinum (100%)
4 3050 bp 26.66 15.98 96.59
NECEvent2014_8_1_scaffold_2576 178_001_scaffold_2576
Species: Clostridium sulfidigenes (50%)
4 1829 bp 28.49 15.99 100.38
NECEvent2014_8_1_scaffold_1583 178_001_scaffold_1583
Genus: Clostridium (60%)
5 2993 bp 25.69 16.14 83.49
NECEvent2014_8_1_scaffold_1919 178_001_scaffold_1919
Genus: Clostridium (75%)
4 2482 bp 27.56 16.26 79.57
NECEvent2014_8_1_scaffold_1845 178_001_scaffold_1845
Genus: Clostridium (50%)
6 2584 bp 25.81 16.37 77.44
NECEvent2014_8_1_scaffold_2716 178_001_scaffold_2716
Species: Lachnospiraceae bacterium COE1 (50%)
2 1734 bp 26.93 16.61 76.47
NECEvent2014_8_1_scaffold_2159 178_001_scaffold_2159
Genus: Clostridium (66.67%)
3 2200 bp 26.14 16.77 82.77
NECEvent2014_8_1_scaffold_2364 178_001_scaffold_2364
Species: [Clostridium] termitidis (50%)
2 1985 bp 26.35 16.85 78.44
NECEvent2014_8_1_scaffold_3901 178_001_scaffold_3901
Species: Clostridium sp. 7_2_43FAA (100%)
1 1188 bp 25.93 17.17 93.69
NECEvent2014_8_1_scaffold_1588 178_001_scaffold_1588
Genus: Clostridium (66.67%)
3 2985 bp 25.33 17.19 56.98
NECEvent2014_8_1_scaffold_2163 178_001_scaffold_2163
Species: Clostridium sulfidigenes (50%)
4 2196 bp 25.18 17.21 59.02
NECEvent2014_8_1_scaffold_2635 178_001_scaffold_2635
Species: Clostridium sp. DL-VIII (50%)
2 1785 bp 26.27 17.48 98.66
NECEvent2014_8_1_scaffold_3971 178_001_scaffold_3971
Species: Clostridium butyricum (50%)
2 1168 bp 24.83 17.72 47.26
NECEvent2014_8_1_scaffold_3664 178_001_scaffold_3664
Species: Intestinibacter bartlettii (100%)
1 1270 bp 25.98 18.19 99.92
NECEvent2014_8_1_scaffold_1386 178_001_scaffold_1386
Genus: Clostridium (80%)
5 3468 bp 28.03 18.25 73.62
NECEvent2014_8_1_scaffold_3142 178_001_scaffold_3142
Species: Clostridium butyricum (50%)
2 1489 bp 26.93 18.44 67.50
NECEvent2014_8_1_scaffold_1035 178_001_scaffold_1035
Genus: Clostridium (50%)
4 4517 bp 26.12 19.53 96.77
NECEvent2014_8_1_scaffold_1025 178_001_scaffold_1025
Phylum: Firmicutes (60%)
5 4548 bp 27.53 19.59 77.97
NECEvent2014_8_1_scaffold_1762 178_001_scaffold_1762
Order: Clostridiales (66.67%)
3 2687 bp 26.83 19.71 92.11
NECEvent2014_8_1_scaffold_1781 178_001_scaffold_1781
Genus: Clostridium (50%)
4 2675 bp 26.77 19.79 87.70
NECEvent2014_8_1_scaffold_2179 178_001_scaffold_2179
Species: Clostridium sp. 7_2_43FAA (66.67%)
3 2182 bp 27.82 19.87 97.07
NECEvent2014_8_1_scaffold_1726 178_001_scaffold_1726
Genus: Clostridium (66.67%)
3 2754 bp 28.29 19.88 92.59
Displaying items 1-50 of 233 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.