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NECEvent2014_8_1_Clostridium_paraputrificum_29_36

NECEvent2014_8_1_Clostridium_30_43
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

rpS3 100% to Clostridium paraputrificum

Displaying items 1-50 of 233 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_3971 178_001_scaffold_3971
Species: Clostridium butyricum (50%)
2 1168 bp 24.83 17.72 47.26
NECEvent2014_8_1_scaffold_4369 178_001_scaffold_4369
Species: Enterococcus faecalis (100%)
1 1061 bp 32.80 30.11 49.76
NECEvent2014_8_1_scaffold_1588 178_001_scaffold_1588
Genus: Clostridium (66.67%)
3 2985 bp 25.33 17.19 56.98
NECEvent2014_8_1_scaffold_2163 178_001_scaffold_2163
Species: Clostridium sulfidigenes (50%)
4 2196 bp 25.18 17.21 59.02
NECEvent2014_8_1_scaffold_2020 178_001_scaffold_2020
Species: Clostridium butyricum (100%)
1 2353 bp 30.26 28.81 59.67
NECEvent2014_8_1_scaffold_3832 178_001_scaffold_3832 3 1212 bp 23.93 9.90 60.64
NECEvent2014_8_1_scaffold_3142 178_001_scaffold_3142
Species: Clostridium butyricum (50%)
2 1489 bp 26.93 18.44 67.50
NECEvent2014_8_1_scaffold_1993 178_001_scaffold_1993
Species: [Clostridium] hiranonis (50%)
2 2389 bp 24.32 8.04 68.19
NECEvent2014_8_1_scaffold_1234 178_001_scaffold_1234
Genus: Clostridium (60%)
5 3884 bp 30.69 50.51 68.33
NECEvent2014_8_1_scaffold_3932 178_001_scaffold_3932
Species: Clostridium sartagoforme (100%)
1 1180 bp 28.98 44.62 68.90
NECEvent2014_8_1_scaffold_848 178_001_scaffold_848
Genus: Clostridium (75%)
8 5478 bp 27.58 33.05 69.24
NECEvent2014_8_1_scaffold_4130 178_001_scaffold_4130
Species: Enterococcus columbae (50%)
2 1123 bp 24.04 10.15 69.72
NECEvent2014_8_1_scaffold_1172 178_001_scaffold_1172
Genus: Clostridium (60%)
5 4043 bp 32.18 78.88 71.36
NECEvent2014_8_1_scaffold_1023 178_001_scaffold_1023
Genus: Clostridium (66.67%)
6 4549 bp 29.70 47.52 71.64
NECEvent2014_8_1_scaffold_295 178_001_scaffold_295
Phylum: Firmicutes (86.67%)
15 12881 bp 27.21 25.49 72.69
NECEvent2014_8_1_scaffold_1386 178_001_scaffold_1386
Genus: Clostridium (80%)
5 3468 bp 28.03 18.25 73.62
NECEvent2014_8_1_scaffold_2889 178_001_scaffold_2889
Species: Clostridium celatum (50%)
2 1635 bp 27.65 22.75 75.60
NECEvent2014_8_1_scaffold_365 178_001_scaffold_365
Genus: Clostridium (54.55%)
11 11070 bp 28.47 32.52 76.40
NECEvent2014_8_1_scaffold_2716 178_001_scaffold_2716
Species: Lachnospiraceae bacterium COE1 (50%)
2 1734 bp 26.93 16.61 76.47
NECEvent2014_8_1_scaffold_4140 178_001_scaffold_4140 5 1120 bp 34.73 35.22 77.14
NECEvent2014_8_1_scaffold_1875 178_001_scaffold_1875
Genus: Clostridium (66.67%)
3 2535 bp 26.15 13.43 77.16
NECEvent2014_8_1_scaffold_1845 178_001_scaffold_1845
Genus: Clostridium (50%)
6 2584 bp 25.81 16.37 77.44
NECEvent2014_8_1_scaffold_1025 178_001_scaffold_1025
Phylum: Firmicutes (60%)
5 4548 bp 27.53 19.59 77.97
NECEvent2014_8_1_scaffold_709 178_001_scaffold_709
Genus: Clostridium (66.67%)
6 6540 bp 28.87 30.62 78.17
NECEvent2014_8_1_scaffold_2364 178_001_scaffold_2364
Species: [Clostridium] termitidis (50%)
2 1985 bp 26.35 16.85 78.44
NECEvent2014_8_1_scaffold_2073 178_001_scaffold_2073
Species: Clostridium botulinum (100%)
1 2293 bp 32.40 75.95 78.50
NECEvent2014_8_1_scaffold_201 178_001_scaffold_201
Genus: Clostridium (54.17%)
24 16412 bp 29.06 31.75 79.04
NECEvent2014_8_1_scaffold_444 178_001_scaffold_444
Genus: Clostridium (77.78%)
9 9478 bp 29.63 39.30 79.32
NECEvent2014_8_1_scaffold_878 178_001_scaffold_878
Genus: Clostridium (80%)
5 6001 bp 31.69 69.51 79.34
NECEvent2014_8_1_scaffold_1693 178_001_scaffold_1693
Genus: Clostridium (66.67%)
3 2808 bp 26.75 15.33 79.49
NECEvent2014_8_1_scaffold_1919 178_001_scaffold_1919
Genus: Clostridium (75%)
4 2482 bp 27.56 16.26 79.57
NECEvent2014_8_1_scaffold_409 178_001_scaffold_409
Genus: Clostridium (66.67%)
15 9965 bp 27.90 26.73 80.02
NECEvent2014_8_1_scaffold_1434 178_001_scaffold_1434
Genus: Clostridium (60%)
5 3328 bp 29.54 46.51 80.32
NECEvent2014_8_1_scaffold_1017 178_001_scaffold_1017
Genus: Clostridium (66.67%)
6 4569 bp 28.34 38.21 80.56
NECEvent2014_8_1_scaffold_1708 178_001_scaffold_1708
Genus: Clostridium (75%)
4 2774 bp 25.16 12.82 80.79
NECEvent2014_8_1_scaffold_3271 178_001_scaffold_3271
Species: Clostridium perfringens (100%)
2 1432 bp 30.38 39.70 81.28
NECEvent2014_8_1_scaffold_706 178_001_scaffold_706
Genus: Clostridium (100%)
5 6568 bp 30.59 65.86 81.35
NECEvent2014_8_1_scaffold_839 178_001_scaffold_839
Genus: Clostridium (57.14%)
7 5563 bp 29.97 43.30 81.38
NECEvent2014_8_1_scaffold_1106 178_001_scaffold_1106
Genus: Paenibacillus (50%)
6 4245 bp 28.69 28.87 81.91
NECEvent2014_8_1_scaffold_2028 178_001_scaffold_2028
Genus: Clostridium (75%)
4 2341 bp 29.35 32.23 81.93
NECEvent2014_8_1_scaffold_2547 178_001_scaffold_2547 3 1847 bp 26.64 22.58 82.35
NECEvent2014_8_1_scaffold_2159 178_001_scaffold_2159
Genus: Clostridium (66.67%)
3 2200 bp 26.14 16.77 82.77
NECEvent2014_8_1_scaffold_456 178_001_scaffold_456
Genus: Clostridium (62.5%)
16 9236 bp 29.55 35.40 83.09
NECEvent2014_8_1_scaffold_552 178_001_scaffold_552
Genus: Clostridium (100%)
6 8101 bp 29.32 29.85 83.14
NECEvent2014_8_1_scaffold_968 178_001_scaffold_968
Order: Clostridiales (71.43%)
7 4836 bp 28.37 28.44 83.25
NECEvent2014_8_1_scaffold_1163 178_001_scaffold_1163
Genus: Clostridium (80%)
5 4076 bp 27.36 20.50 83.32
NECEvent2014_8_1_scaffold_1583 178_001_scaffold_1583
Genus: Clostridium (60%)
5 2993 bp 25.69 16.14 83.49
NECEvent2014_8_1_scaffold_461 178_001_scaffold_461
Genus: Clostridium (60%)
10 9200 bp 29.37 28.73 83.64
NECEvent2014_8_1_scaffold_1559 178_001_scaffold_1559
Order: Clostridiales (60%)
5 3051 bp 24.81 13.08 83.78
NECEvent2014_8_1_scaffold_401 178_001_scaffold_401
Genus: Clostridium (91.67%)
12 10113 bp 27.88 25.88 84.07
Displaying items 1-50 of 233 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.