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NECEvent2014_8_1_Clostridium_perfringens-rel_30_12

NECEvent2014_8_1_Clostridium_perfringens_31_10
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 301-350 of 731 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_3497 178_001_scaffold_3497
Species: Clostridium perfringens (100%)
2 1336 bp 33.23 8.08 98.80
NECEvent2014_8_1_scaffold_3498 178_001_scaffold_3498
Species: Clostridium perfringens (100%)
2 1335 bp 28.91 5.84 96.40
NECEvent2014_8_1_scaffold_4266 178_001_scaffold_4266
Species: Clostridium perfringens (100%)
2 1087 bp 29.07 4.28 99.63
NECEvent2014_8_1_scaffold_1964 178_001_scaffold_1964
Species: Clostridium perfringens (100%)
2 2430 bp 31.07 7.28 100.25
NECEvent2014_8_1_scaffold_2734 178_001_scaffold_2734
Species: Clostridium perfringens (100%)
2 1727 bp 28.78 5.39 81.30
NECEvent2014_8_1_scaffold_2736 178_001_scaffold_2736
Species: Clostridium perfringens (100%)
2 1725 bp 33.62 13.74 99.30
NECEvent2014_8_1_scaffold_3762 178_001_scaffold_3762
Species: Clostridium perfringens (100%)
2 1235 bp 28.18 4.13 87.94
NECEvent2014_8_1_scaffold_3507 178_001_scaffold_3507
Species: Clostridium perfringens (100%)
2 1330 bp 30.45 18.05 96.99
NECEvent2014_8_1_scaffold_1972 178_001_scaffold_1972
Species: Clostridium perfringens (100%)
2 2419 bp 31.91 14.63 83.22
NECEvent2014_8_1_scaffold_1719 178_001_scaffold_1719
Species: Clostridium perfringens (100%)
2 2759 bp 33.89 15.44 85.68
NECEvent2014_8_1_scaffold_2487 178_001_scaffold_2487
Species: Clostridium perfringens (100%)
2 1895 bp 32.61 12.59 98.94
NECEvent2014_8_1_scaffold_952 178_001_scaffold_952
Species: Clostridium perfringens (100%)
2 4903 bp 35.75 24.29 96.00
NECEvent2014_8_1_scaffold_4025 178_001_scaffold_4025
Species: Clostridium perfringens (100%)
2 1154 bp 29.12 6.24 89.17
NECEvent2014_8_1_scaffold_4281 178_001_scaffold_4281
Species: Clostridium perfringens (100%)
2 1084 bp 32.75 9.82 99.63
NECEvent2014_8_1_scaffold_4538 178_001_scaffold_4538
Species: Clostridium perfringens (100%)
2 1020 bp 31.47 8.24 103.24
NECEvent2014_8_1_scaffold_3004 178_001_scaffold_3004
Species: Clostridium perfringens (100%)
2 1563 bp 31.80 12.67 95.78
NECEvent2014_8_1_scaffold_1725 178_001_scaffold_1725
Species: Clostridium perfringens (100%)
2 2756 bp 32.15 9.91 82.40
NECEvent2014_8_1_scaffold_3262 178_001_scaffold_3262
Species: Clostridium perfringens (100%)
2 1437 bp 34.66 22.65 98.33
NECEvent2014_8_1_scaffold_4542 178_001_scaffold_4542
Species: Clostridium perfringens (100%)
2 1019 bp 30.42 3.83 83.32
NECEvent2014_8_1_scaffold_4287 178_001_scaffold_4287
Species: Clostridium perfringens (100%)
2 1082 bp 29.85 3.88 98.15
NECEvent2014_8_1_scaffold_3776 178_001_scaffold_3776
Species: Clostridium perfringens (100%)
2 1230 bp 27.80 10.49 85.61
NECEvent2014_8_1_scaffold_2498 178_001_scaffold_2498
Species: Clostridium perfringens (100%)
2 1889 bp 32.03 11.12 100.69
NECEvent2014_8_1_scaffold_4290 178_001_scaffold_4290
Species: Clostridium perfringens (100%)
2 1082 bp 34.10 10.54 63.77
NECEvent2014_8_1_scaffold_2755 178_001_scaffold_2755
Species: Clostridium perfringens (100%)
2 1714 bp 29.17 6.83 97.84
NECEvent2014_8_1_scaffold_3779 178_001_scaffold_3779
Species: Clostridium perfringens (100%)
2 1229 bp 31.16 7.81 98.62
NECEvent2014_8_1_scaffold_4295 178_001_scaffold_4295
Species: Clostridium perfringens (100%)
2 1079 bp 26.88 4.03 69.51
NECEvent2014_8_1_scaffold_4296 178_001_scaffold_4296
Species: Clostridium perfringens (100%)
2 1079 bp 33.46 5.14 97.59
NECEvent2014_8_1_scaffold_2762 178_001_scaffold_2762
Species: Clostridium perfringens (100%)
2 1709 bp 27.97 4.56 99.88
NECEvent2014_8_1_scaffold_3787 178_001_scaffold_3787
Species: Clostridium perfringens (100%)
2 1227 bp 28.12 6.36 100.49
NECEvent2014_8_1_scaffold_4299 178_001_scaffold_4299
Species: Clostridium perfringens (100%)
2 1078 bp 31.45 7.24 99.07
NECEvent2014_8_1_scaffold_3020 178_001_scaffold_3020
Species: Clostridium perfringens (100%)
2 1552 bp 30.61 12.37 98.58
NECEvent2014_8_1_scaffold_4556 178_001_scaffold_4556
Species: Clostridium perfringens (100%)
2 1015 bp 30.34 13.30 89.26
NECEvent2014_8_1_scaffold_2509 178_001_scaffold_2509
Species: Clostridium perfringens (100%)
2 1880 bp 27.71 5.59 75.16
NECEvent2014_8_1_scaffold_3025 178_001_scaffold_3025
Species: Clostridium perfringens (100%)
2 1546 bp 30.34 5.43 98.38
NECEvent2014_8_1_scaffold_3026 178_001_scaffold_3026
Species: Clostridium perfringens (100%)
2 1546 bp 31.11 9.90 77.04
NECEvent2014_8_1_scaffold_4050 178_001_scaffold_4050
Species: Clostridium perfringens (100%)
2 1146 bp 30.72 7.07 98.69
NECEvent2014_8_1_scaffold_2771 178_001_scaffold_2771
Species: Clostridium tetanomorphum (50%)
2 1706 bp 31.13 7.56 96.89
NECEvent2014_8_1_scaffold_3539 178_001_scaffold_3539
Species: Clostridium ljungdahlii (50%)
2 1317 bp 27.71 5.01 100.46
NECEvent2014_8_1_scaffold_4307 178_001_scaffold_4307
Species: Clostridium perfringens (100%)
2 1076 bp 30.11 6.69 96.47
NECEvent2014_8_1_scaffold_1493 178_001_scaffold_1493
Species: Clostridium perfringens (100%)
2 3197 bp 30.18 7.84 99.00
NECEvent2014_8_1_scaffold_3797 178_001_scaffold_3797
Species: Clostridium perfringens (100%)
2 1224 bp 28.84 5.15 78.68
NECEvent2014_8_1_scaffold_2774 178_001_scaffold_2774
Species: Clostridium perfringens (100%)
2 1705 bp 31.32 6.69 84.63
NECEvent2014_8_1_scaffold_4310 178_001_scaffold_4310
Species: Clostridium perfringens (100%)
2 1075 bp 30.14 6.98 76.19
NECEvent2014_8_1_scaffold_3543 178_001_scaffold_3543
Species: Clostridium perfringens (50%)
2 1316 bp 27.74 4.79 103.04
NECEvent2014_8_1_scaffold_4311 178_001_scaffold_4311
Species: Clostridium beijerinckii (50%)
2 1075 bp 25.77 5.02 100.47
NECEvent2014_8_1_scaffold_4567 178_001_scaffold_4567
Species: Clostridium perfringens (100%)
2 1011 bp 25.02 5.34 89.91
NECEvent2014_8_1_scaffold_1240 178_001_scaffold_1240
Species: Clostridium perfringens (100%)
2 3868 bp 31.13 18.11 94.62
NECEvent2014_8_1_scaffold_2008 178_001_scaffold_2008
Species: Clostridium perfringens (100%)
2 2369 bp 28.66 5.95 94.22
NECEvent2014_8_1_scaffold_1497 178_001_scaffold_1497
Species: Clostridium butyricum (50%)
2 3187 bp 27.14 9.08 88.96
NECEvent2014_8_1_scaffold_2009 178_001_scaffold_2009
Species: Clostridium perfringens (100%)
2 2369 bp 35.08 15.45 91.81
Displaying items 301-350 of 731 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.