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NECEvent2014_8_1_Clostridium_perfringens-rel_30_12

NECEvent2014_8_1_Clostridium_perfringens_31_10
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 1-50 of 731 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_4610 178_001_scaffold_4610
Species: Clostridium perfringens (100%)
2 1000 bp 29.70 6.60 100.80
NECEvent2014_8_1_scaffold_4605 178_001_scaffold_4605
Species: Clostridium perfringens (100%)
1 1001 bp 29.57 6.89 81.82
NECEvent2014_8_1_scaffold_4604 178_001_scaffold_4604
Species: Clostridium perfringens (100%)
1 1002 bp 29.64 8.38 90.72
NECEvent2014_8_1_scaffold_4597 178_001_scaffold_4597
Species: Clostridium perfringens (100%)
1 1004 bp 27.89 3.29 92.93
NECEvent2014_8_1_scaffold_4588 178_001_scaffold_4588
Species: Clostridium perfringens (100%)
1 1005 bp 28.26 3.58 85.07
NECEvent2014_8_1_scaffold_4590 178_001_scaffold_4590
Species: Clostridium perfringens (100%)
2 1005 bp 30.35 5.07 99.70
NECEvent2014_8_1_scaffold_4591 178_001_scaffold_4591
Species: Clostridium perfringens (100%)
1 1005 bp 31.14 5.67 99.70
NECEvent2014_8_1_scaffold_4587 178_001_scaffold_4587
Species: Clostridium perfringens (100%)
1 1006 bp 25.15 8.05 73.06
NECEvent2014_8_1_scaffold_4583 178_001_scaffold_4583
Species: Clostridium perfringens (100%)
2 1007 bp 29.49 6.85 98.61
NECEvent2014_8_1_scaffold_4578 178_001_scaffold_4578
Species: Clostridium perfringens (100%)
2 1008 bp 26.19 2.68 94.35
NECEvent2014_8_1_scaffold_4570 178_001_scaffold_4570
Species: Clostridium perfringens (100%)
2 1010 bp 28.22 5.79 70.10
NECEvent2014_8_1_scaffold_4571 178_001_scaffold_4571
Species: Clostridium perfringens (100%)
1 1010 bp 28.32 4.16 89.70
NECEvent2014_8_1_scaffold_4567 178_001_scaffold_4567
Species: Clostridium perfringens (100%)
2 1011 bp 25.02 5.34 89.91
NECEvent2014_8_1_scaffold_4555 178_001_scaffold_4555
Species: Clostridium perfringens (100%)
1 1015 bp 35.17 8.28 99.61
NECEvent2014_8_1_scaffold_4556 178_001_scaffold_4556
Species: Clostridium perfringens (100%)
2 1015 bp 30.34 13.30 89.26
NECEvent2014_8_1_scaffold_4550 178_001_scaffold_4550
Species: Clostridium perfringens (100%)
1 1016 bp 29.63 7.38 91.83
NECEvent2014_8_1_scaffold_4542 178_001_scaffold_4542
Species: Clostridium perfringens (100%)
2 1019 bp 30.42 3.83 83.32
NECEvent2014_8_1_scaffold_4536 178_001_scaffold_4536
Species: Clostridium perfringens (100%)
1 1020 bp 29.12 5.59 60.29
NECEvent2014_8_1_scaffold_4538 178_001_scaffold_4538
Species: Clostridium perfringens (100%)
2 1020 bp 31.47 8.24 103.24
NECEvent2014_8_1_scaffold_4533 178_001_scaffold_4533
Species: Clostridium perfringens (100%)
1 1021 bp 32.32 16.45 98.14
NECEvent2014_8_1_scaffold_4529 178_001_scaffold_4529
Species: Clostridium perfringens (100%)
1 1022 bp 31.41 6.46 99.80
NECEvent2014_8_1_scaffold_4524 178_001_scaffold_4524
Species: Clostridium perfringens (100%)
1 1023 bp 31.87 9.38 100.00
NECEvent2014_8_1_scaffold_4526 178_001_scaffold_4526
Species: Clostridium perfringens (100%)
1 1023 bp 28.54 4.99 97.07
NECEvent2014_8_1_scaffold_4515 178_001_scaffold_4515
Species: Clostridium perfringens (100%)
1 1024 bp 26.27 2.64 99.90
NECEvent2014_8_1_scaffold_4513 178_001_scaffold_4513
Species: Clostridium perfringens (100%)
2 1025 bp 29.46 6.73 95.12
NECEvent2014_8_1_scaffold_4514 178_001_scaffold_4514
Species: Clostridium perfringens (100%)
3 1025 bp 28.88 4.10 86.05
NECEvent2014_8_1_scaffold_4502 178_001_scaffold_4502
Species: Clostridium perfringens (100%)
3 1026 bp 28.07 4.53 97.66
NECEvent2014_8_1_scaffold_4506 178_001_scaffold_4506
Species: Clostridium perfringens (100%)
1 1026 bp 31.77 7.31 99.71
NECEvent2014_8_1_scaffold_4507 178_001_scaffold_4507
Species: Clostridium perfringens (100%)
2 1026 bp 31.29 9.65 95.32
NECEvent2014_8_1_scaffold_4500 178_001_scaffold_4500
Species: Clostridium perfringens (100%)
1 1027 bp 30.96 9.93 98.44
NECEvent2014_8_1_scaffold_4489 178_001_scaffold_4489
Species: Clostridium perfringens (100%)
1 1030 bp 32.52 15.15 95.53
NECEvent2014_8_1_scaffold_4478 178_001_scaffold_4478
Species: Clostridium botulinum (50%)
2 1032 bp 29.36 12.21 90.41
NECEvent2014_8_1_scaffold_4479 178_001_scaffold_4479
Species: Clostridium perfringens (100%)
1 1032 bp 28.68 6.10 99.71
NECEvent2014_8_1_scaffold_4481 178_001_scaffold_4481
Species: Clostridium perfringens (100%)
1 1032 bp 30.52 5.52 86.05
NECEvent2014_8_1_scaffold_4471 178_001_scaffold_4471
Species: Clostridium perfringens (100%)
1 1035 bp 29.76 6.38 88.70
NECEvent2014_8_1_scaffold_4465 178_001_scaffold_4465
Species: Clostridium perfringens (100%)
2 1036 bp 29.63 10.42 75.87
NECEvent2014_8_1_scaffold_4453 178_001_scaffold_4453
Species: Clostridium perfringens (100%)
1 1039 bp 31.67 13.86 99.62
NECEvent2014_8_1_scaffold_4457 178_001_scaffold_4457
Species: Clostridium perfringens (100%)
1 1039 bp 28.39 4.91 81.14
NECEvent2014_8_1_scaffold_4445 178_001_scaffold_4445
Species: Clostridium perfringens (100%)
1 1041 bp 30.16 9.22 81.84
NECEvent2014_8_1_scaffold_4446 178_001_scaffold_4446
Species: Clostridium saccharobutylicum (100%)
1 1041 bp 26.90 4.61 84.73
NECEvent2014_8_1_scaffold_4435 178_001_scaffold_4435
Species: Clostridium perfringens (100%)
1 1044 bp 32.38 9.63 99.71
NECEvent2014_8_1_scaffold_4430 178_001_scaffold_4430
Species: Clostridium perfringens (100%)
1 1046 bp 27.63 9.75 88.62
NECEvent2014_8_1_scaffold_4425 178_001_scaffold_4425
Species: Clostridium perfringens (100%)
2 1047 bp 29.04 6.59 65.90
NECEvent2014_8_1_scaffold_4427 178_001_scaffold_4427
Species: Clostridium perfringens (100%)
1 1047 bp 31.23 8.60 88.83
NECEvent2014_8_1_scaffold_4428 178_001_scaffold_4428
Species: Clostridium perfringens (100%)
1 1047 bp 28.08 4.30 64.47
NECEvent2014_8_1_scaffold_4419 178_001_scaffold_4419
Species: Clostridium perfringens (100%)
1 1050 bp 29.90 15.71 100.00
NECEvent2014_8_1_scaffold_4409 178_001_scaffold_4409
Species: Clostridium perfringens (100%)
1 1051 bp 27.50 7.42 82.78
NECEvent2014_8_1_scaffold_4416 178_001_scaffold_4416
Species: Clostridium perfringens (100%)
1 1051 bp 31.11 5.99 99.62
NECEvent2014_8_1_scaffold_4402 178_001_scaffold_4402
Species: Clostridium perfringens (100%)
1 1053 bp 30.39 5.70 89.46
NECEvent2014_8_1_scaffold_4394 178_001_scaffold_4394
Species: Clostridium perfringens (100%)
1 1054 bp 29.51 4.55 99.91
Displaying items 1-50 of 731 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.