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NECEvent2014_8_1_Clostridium_perfringens-rel_30_12

NECEvent2014_8_1_Clostridium_perfringens_31_10
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 1-50 of 731 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_285 178_001_scaffold_285
Species: Clostridium perfringens (100%)
27 13112 bp 34.84 22.14 91.61
NECEvent2014_8_1_scaffold_378 178_001_scaffold_378
Species: Clostridium perfringens (100%)
9 10720 bp 32.46 14.61 95.54
NECEvent2014_8_1_scaffold_441 178_001_scaffold_441
Species: Clostridium perfringens (100%)
9 9490 bp 34.51 22.97 87.28
NECEvent2014_8_1_scaffold_457 178_001_scaffold_457
Species: Clostridium perfringens (75%)
8 9235 bp 34.27 10.74 89.63
NECEvent2014_8_1_scaffold_544 178_001_scaffold_544
Species: Clostridium sp. IBUN13A (66.67%)
9 8186 bp 26.97 12.24 82.27
NECEvent2014_8_1_scaffold_625 178_001_scaffold_625
Species: Clostridium sp. IBUN22A (50%)
10 7271 bp 30.13 16.83 75.55
NECEvent2014_8_1_scaffold_689 178_001_scaffold_689
Species: Clostridium perfringens (75%)
4 6681 bp 29.04 13.02 97.58
NECEvent2014_8_1_scaffold_799 178_001_scaffold_799
Species: Clostridium perfringens (100%)
1 5846 bp 31.65 9.85 99.97
NECEvent2014_8_1_scaffold_806 178_001_scaffold_806
Species: Clostridium perfringens (100%)
5 5790 bp 32.14 11.09 96.22
NECEvent2014_8_1_scaffold_867 178_001_scaffold_867
Species: Clostridium perfringens (100%)
5 5370 bp 35.47 27.71 91.62
NECEvent2014_8_1_scaffold_914 178_001_scaffold_914
Genus: Clostridium (50%)
6 5120 bp 27.89 11.78 98.96
NECEvent2014_8_1_scaffold_919 178_001_scaffold_919
Species: Clostridium sp. IBUN22A (50%)
6 5089 bp 27.73 15.98 91.20
NECEvent2014_8_1_scaffold_926 178_001_scaffold_926
Species: Clostridium perfringens (83.33%)
6 5048 bp 32.49 14.80 91.88
NECEvent2014_8_1_scaffold_952 178_001_scaffold_952
Species: Clostridium perfringens (100%)
2 4903 bp 35.75 24.29 96.00
NECEvent2014_8_1_scaffold_1020 178_001_scaffold_1020
Species: Clostridium perfringens (100%)
2 4557 bp 32.76 16.13 96.31
NECEvent2014_8_1_scaffold_1029 178_001_scaffold_1029
Species: Clostridium perfringens (100%)
4 4533 bp 33.49 10.85 98.28
NECEvent2014_8_1_scaffold_1058 178_001_scaffold_1058
Genus: Clostridium (100%)
4 4433 bp 30.61 15.84 93.93
NECEvent2014_8_1_scaffold_1061 178_001_scaffold_1061
Species: Clostridium perfringens (100%)
6 4422 bp 31.55 9.09 89.82
NECEvent2014_8_1_scaffold_1071 178_001_scaffold_1071
Species: Clostridium perfringens (100%)
2 4346 bp 31.27 10.22 95.47
NECEvent2014_8_1_scaffold_1075 178_001_scaffold_1075
Species: Clostridium perfringens (100%)
4 4337 bp 31.63 10.86 88.40
NECEvent2014_8_1_scaffold_1084 178_001_scaffold_1084
Species: Clostridium perfringens (100%)
5 4298 bp 35.62 16.54 100.02
NECEvent2014_8_1_scaffold_1110 178_001_scaffold_1110
Species: Clostridium perfringens (100%)
4 4235 bp 33.25 13.74 92.30
NECEvent2014_8_1_scaffold_1117 178_001_scaffold_1117
Species: Clostridium perfringens (66.67%)
3 4214 bp 32.20 12.00 80.80
NECEvent2014_8_1_scaffold_1122 178_001_scaffold_1122
Species: Clostridium perfringens (100%)
4 4200 bp 30.86 13.64 97.50
NECEvent2014_8_1_scaffold_1139 178_001_scaffold_1139
Species: Clostridium perfringens (100%)
3 4158 bp 29.97 22.40 84.20
NECEvent2014_8_1_scaffold_1151 178_001_scaffold_1151
Species: Clostridium perfringens (100%)
5 4115 bp 30.47 7.36 92.59
NECEvent2014_8_1_scaffold_1157 178_001_scaffold_1157
Species: Clostridium perfringens (100%)
3 4093 bp 31.59 9.38 96.90
NECEvent2014_8_1_scaffold_1158 178_001_scaffold_1158
Species: Clostridium perfringens (100%)
4 4091 bp 31.17 7.55 97.24
NECEvent2014_8_1_scaffold_1159 178_001_scaffold_1159
Species: Clostridium perfringens (100%)
5 4090 bp 28.73 7.00 92.05
NECEvent2014_8_1_scaffold_1176 178_001_scaffold_1176
Species: Clostridium perfringens (100%)
5 4039 bp 30.77 8.39 91.88
NECEvent2014_8_1_scaffold_1177 178_001_scaffold_1177
Species: Clostridium perfringens (100%)
3 4037 bp 32.18 11.78 91.03
NECEvent2014_8_1_scaffold_1180 178_001_scaffold_1180
Species: Clostridium perfringens (100%)
6 4026 bp 31.20 13.41 86.44
NECEvent2014_8_1_scaffold_1183 178_001_scaffold_1183
Species: Clostridium perfringens (100%)
7 4022 bp 31.85 8.73 92.79
NECEvent2014_8_1_scaffold_1184 178_001_scaffold_1184
Species: Clostridium perfringens (100%)
6 4020 bp 29.95 8.88 87.16
NECEvent2014_8_1_scaffold_1209 178_001_scaffold_1209
Species: Clostridium perfringens (100%)
1 3963 bp 31.42 11.88 99.92
NECEvent2014_8_1_scaffold_1240 178_001_scaffold_1240
Species: Clostridium perfringens (100%)
2 3868 bp 31.13 18.11 94.62
NECEvent2014_8_1_scaffold_1258 178_001_scaffold_1258
Species: Clostridium perfringens (100%)
2 3821 bp 32.01 14.76 90.05
NECEvent2014_8_1_scaffold_1259 178_001_scaffold_1259
Species: Clostridium perfringens (100%)
2 3815 bp 31.19 11.56 93.58
NECEvent2014_8_1_scaffold_1264 178_001_scaffold_1264
Species: Clostridium perfringens (100%)
1 3793 bp 32.27 7.20 99.89
NECEvent2014_8_1_scaffold_1268 178_001_scaffold_1268
Species: Clostridium perfringens (100%)
2 3771 bp 30.97 8.27 97.14
NECEvent2014_8_1_scaffold_1270 178_001_scaffold_1270
Species: Clostridium perfringens (100%)
3 3763 bp 33.19 19.29 92.08
NECEvent2014_8_1_scaffold_1286 178_001_scaffold_1286
Species: Clostridium perfringens (66.67%)
3 3721 bp 31.87 12.66 99.89
NECEvent2014_8_1_scaffold_1319 178_001_scaffold_1319
Species: Clostridium perfringens (100%)
4 3631 bp 30.74 5.45 95.02
NECEvent2014_8_1_scaffold_1323 178_001_scaffold_1323
Genus: Clostridium (66.67%)
3 3618 bp 25.84 9.04 93.86
NECEvent2014_8_1_scaffold_1328 178_001_scaffold_1328
Species: Clostridium perfringens (100%)
1 3614 bp 31.63 10.54 94.30
NECEvent2014_8_1_scaffold_1337 178_001_scaffold_1337
Species: Clostridium perfringens (100%)
3 3592 bp 32.15 8.85 100.64
NECEvent2014_8_1_scaffold_1342 178_001_scaffold_1342
Species: Clostridium perfringens (100%)
1 3584 bp 32.90 8.45 98.44
NECEvent2014_8_1_scaffold_1344 178_001_scaffold_1344
Species: Clostridium perfringens (100%)
1 3582 bp 33.36 14.32 99.92
NECEvent2014_8_1_scaffold_1358 178_001_scaffold_1358
Species: Clostridium perfringens (100%)
1 3532 bp 32.98 9.85 99.97
NECEvent2014_8_1_scaffold_1362 178_001_scaffold_1362
Species: Clostridium perfringens (75%)
4 3526 bp 30.80 7.66 90.70
Displaying items 1-50 of 731 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.