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NECEvent2014_8_2_scaffold_704

Alias: 178_002_scaffold_704

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_2_scaffold_704_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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65..1432
DNA (1368bp) protein (456aa)
DNA repair protein radA n=1 Tax=Clostridium colicanis 209318 RepID=N9XY13_9CLOT rbh
radA; DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sulliva
NECEvent2014_8_2_scaffold_704_2
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1448..2512
DNA (1065bp) protein (355aa)
DNA integrity scanning protein DisA n=1 Tax=Clostridium colicanis 209318 RepID=N9XM80_9CLOT rbh
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-R
disA; DNA integrity scanning protein DisA
NECEvent2014_8_2_scaffold_704_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2568..2960)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIF2_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY80831.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
NECEvent2014_8_2_scaffold_704_4
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3241..4335
DNA (1095bp) protein (365aa)
PilT protein domain protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYX6_9CLOT
PilT protein domain protein {ECO:0000313|EMBL:EHI97105.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PIN domain protein
NECEvent2014_8_2_scaffold_704_5
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4348..5028
DNA (681bp) protein (227aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F303_9CLOT
NECEvent2014_8_2_scaffold_704_6
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5351..7066
DNA (1716bp) protein (572aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:000025
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QD37_9CLOT rbh
NECEvent2014_8_2_scaffold_704_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7083..8495
DNA (1413bp) protein (471aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
Cysteine--tRNA ligase n=3 Tax=Clostridium botulinum RepID=SYC_CLOBA rbh
NECEvent2014_8_2_scaffold_704_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8548..8970
DNA (423bp) protein (141aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01
mrnC; mini-ribonuclease 3 (EC:3.1.26.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H643_9CLOT
NECEvent2014_8_2_scaffold_704_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8984..9799
DNA (816bp) protein (272aa)
Putative Probable tRNA/rRNA methyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUT5_9CLOT rbh
RNA methyltransferase {ECO:0000313|EMBL:KJU70552.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
RNA 2'-O ribose methyltransferase substrate binding family protein
NECEvent2014_8_2_scaffold_704_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9813..10352
DNA (540bp) protein (180aa)
Putative Tetracycline resistance protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F308_9CLOT
yacP-like NYN domain protein
YacP-like NYN domain protein {ECO:0000313|EMBL:AIY84968.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sull
NECEvent2014_8_2_scaffold_704_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10397..11038
DNA (642bp) protein (214aa)
RNA polymerase sigma-H factor n=2 Tax=Clostridium botulinum E RepID=B2UY94_CLOBA rbh
sigH; RNA polymerase factor sigma-70
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EES48702.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str.
NECEvent2014_8_2_scaffold_704_trna_1
unknown

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11115..11187
DNA (73bp)
transferRNA
NECEvent2014_8_2_scaffold_704_12
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11250..11345
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BDP9_9RHOB
translation elongation factor 1A (EF-1A/EF-Tu)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacter
Displaying 13 items

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