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NECEvent2014_8_2_scaffold_256

Alias: 178_002_scaffold_256

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_2_scaffold_256_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..167)
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1BUM5_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT14579.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
hypothetical protein
NECEvent2014_8_2_scaffold_256_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(411..983)
DNA (573bp) protein (191aa)
LexA repressor n=2 Tax=Clostridium perfringens RepID=B1BUM6_CLOPF rbh
LexA repressor {ECO:0000313|EMBL:EDT14620.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
lexa repressor
NECEvent2014_8_2_scaffold_256_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1050..1520)
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1BUM7_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT14583.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
hypothetical protein
NECEvent2014_8_2_scaffold_256_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1664..3952)
DNA (2289bp) protein (763aa)
Rad3-like DNA helicase (EC:3.6.4.12)
Dead2 domain protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHW3_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30660.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_8_2_scaffold_256_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4077..4667)
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JDY2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30661.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein DUF1836
NECEvent2014_8_2_scaffold_256_6

Not on your lists

5562..5804
DNA (243bp) protein (81aa)
Conserved domain protein n=3 Tax=Clostridium butyricum RepID=C4ICV4_CLOBU
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ETJ16625.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
AbrB family transcriptional regulator
NECEvent2014_8_2_scaffold_256_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5901..6746)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule
rsmI; ribosomal RNA small subunit methyltransferase I (EC:2.1.1.198)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A2F2_CLOBU rbh
NECEvent2014_8_2_scaffold_256_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6750..7502)
DNA (753bp) protein (251aa)
tRNA (Adenine37-N(6))-methyltransferase TrmN6 {ECO:0000313|EMBL:KJZ85721.1}; EC=2.1.1.223 {ECO:0000313|EMBL:KJZ85721.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostr
Methyltransferase small n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9L9_CLOBU rbh
small; methyltransferase Small
NECEvent2014_8_2_scaffold_256_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7897..9177)
DNA (1281bp) protein (427aa)
NLP/P60 protein n=2 Tax=Clostridium butyricum RepID=C4ICV1_CLOBU rbh
Glycoside hydrolase {ECO:0000313|EMBL:KHD15458.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
protein P54
NECEvent2014_8_2_scaffold_256_trna_1
unknown

Not on your lists

9468..9540
DNA (73bp)
transferRNA
NECEvent2014_8_2_scaffold_256_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9627..10271
DNA (645bp) protein (215aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4ICV0_CLOBU rbh
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:EEP55867.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostrid
haloacid dehalogenase superfamily
NECEvent2014_8_2_scaffold_256_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10364..11107)
DNA (744bp) protein (248aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
Foldase protein PrsA n=3 Tax=Clostridium butyricum RepID=B1R0E0_CLOBU rbh
PpiC-type peptidyl-prolyl cis-trans isomerase
NECEvent2014_8_2_scaffold_256_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11259..11936
DNA (678bp) protein (226aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBas
ung; uracil-DNA glycosylase Ung (EC:3.2.2.27)
Uracil-DNA glycosylase n=2 Tax=Clostridium butyricum RepID=M8JN51_CLOBU rbh
NECEvent2014_8_2_scaffold_256_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12021..12206)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AD36_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ85700.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
NECEvent2014_8_2_scaffold_256_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12447..12857
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8KHV8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30670.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_2_scaffold_256_trna_2
unknown

Not on your lists

comp(13072..13144)
DNA (73bp)
transferRNA
NECEvent2014_8_2_scaffold_256_15

Not on your lists

comp(13467..14096)
DNA (630bp) protein (210aa)
Resolvase/recombinase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDX5_CLOBU rbh
Resolvase/recombinase {ECO:0000313|EMBL:ETJ16634.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
site-specific recombinase, DNA invertase Pin
NECEvent2014_8_2_scaffold_256_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14860..15759)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEY4_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30672.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
DeoR-family transcriptional regulator
NECEvent2014_8_2_scaffold_256_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15811..16464)
DNA (654bp) protein (218aa)
Phosphorylated carbohydrates phosphatase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JN46_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ94656.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
HAD-superfamily hydrolase
NECEvent2014_8_2_scaffold_256_18
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16777..17727
DNA (951bp) protein (317aa)
Ser/Thr protein phosphatase family protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9L2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ94635.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
metallophosphoesterase
NECEvent2014_8_2_scaffold_256_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17921..18658
DNA (738bp) protein (246aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=632245 spec
cobB3; NAD-dependent protein deacetylase (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHV3_CLOBU rbh
NECEvent2014_8_2_scaffold_256_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18706..19179)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDX0_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:EEP55837.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
hypothetical protein
NECEvent2014_8_2_scaffold_256_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19160..19381)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 PF5_CLOBU">RepID=M8JPF5_CLOBU
Transcriptional regulator {ECO:0000313|EMBL:ENZ30677.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_2_scaffold_256_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19687..19839)
DNA (153bp) protein (51aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R0C8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87986.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_8_2_scaffold_256_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20130..20567
DNA (438bp) protein (146aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1R0C7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87992.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_8_2_scaffold_256_24

Not on your lists

comp(21039..21323)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JDW6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETJ16643.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
NECEvent2014_8_2_scaffold_256_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21540..23627)
DNA (2088bp) protein (696aa)
Translation elongation factor G n=2 Tax=Clostridium butyricum RepID=B1R0B8_CLOBU rbh
Translation elongation factor G {ECO:0000313|EMBL:EEP55838.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 st
fusA2; elongation factor G
NECEvent2014_8_2_scaffold_256_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23953..25425
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YTF7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30690.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
dolichyl-phosphate-mannose-mannosyltransferase family protein
NECEvent2014_8_2_scaffold_256_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25522..26508)
DNA (987bp) protein (329aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1R0B6_CLOBU rbh
GtrA family protein {ECO:0000313|EMBL:EEP55948.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL
putative phosphoserine phosphatase
Displaying 29 items

View Taxonomy