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NECEvent2014_8_2_scaffold_568

Alias: 178_002_scaffold_568

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_2_scaffold_568_1
Bacillus sp. JS, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(164..277)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=87 Tax=Firmicutes RepID=RL36_BACA2
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1127744 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus
NECEvent2014_8_2_scaffold_568_2
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(332..550)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=14 Tax=Clostridium RepID=IF1_CLOB8
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-V
NECEvent2014_8_2_scaffold_568_3
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(927..1676)
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
map1; methionine aminopeptidase Map (EC:3.4.11.18)
Methionine aminopeptidase n=3 Tax=Clostridium butyricum RepID=B1QYE9_CLOBU rbh
NECEvent2014_8_2_scaffold_568_4
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1676..2323)
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
adk; adenylate kinase Adk (EC:2.7.4.3)
Adenylate kinase n=4 Tax=Clostridium butyricum RepID=B1QYF0_CLOBU rbh
NECEvent2014_8_2_scaffold_568_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2349..3635)
DNA (1287bp) protein (429aa)
Protein translocase subunit SecY n=2 Tax=Clostridium butyricum RepID=M8J622_CLOBU rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
secY; protein translocase subunit SecY
NECEvent2014_8_2_scaffold_568_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3637..4077)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=4 Tax=Clostridium butyricum RepID=B1QYF2_CLOBU
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplO; 50S ribosomal protein L15
NECEvent2014_8_2_scaffold_568_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4099..4278)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=4 Tax=Clostridium butyricum RepID=B1QYF3_CLOBU
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
rpmD; 50S ribosomal protein L30
NECEvent2014_8_2_scaffold_568_8
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4292..4789)
DNA (498bp) protein (166aa)
30S ribosomal protein S5 n=4 Tax=Clostridium butyricum RepID=B1QYF4_CLOBU rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rpsE; 30S ribosomal protein S5
NECEvent2014_8_2_scaffold_568_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4809..5168)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=4 Tax=Clostridium butyricum RepID=B1QYF5_CLOBU
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rplR; 50S ribosomal protein L18
NECEvent2014_8_2_scaffold_568_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5188..5730)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=4 Tax=Clostridium butyricum RepID=B1QYF6_CLOBU rbh
50S ribosomal protein L6 {ECO:0000313|EMBL:KHD14872.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rplF; 50S ribosomal protein L6
NECEvent2014_8_2_scaffold_568_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5801..6199)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=3 Tax=Clostridium butyricum RepID=B1QYF7_CLOBU
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsH; 30S ribosomal protein S8
NECEvent2014_8_2_scaffold_568_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6232..6417)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=5 Tax=Clostridium RepID=U5MP94_CLOSA
rpsZ; 30S ribosomal protein S14 type Z
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
NECEvent2014_8_2_scaffold_568_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6434..6973)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=4 Tax=Clostridium butyricum RepID=B1QYF9_CLOBU rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.
rplE; 50S ribosomal protein L5
NECEvent2014_8_2_scaffold_568_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6996..7310)
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=4 Tax=Clostridium butyricum RepID=B1QYG0_CLOBU
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str.
rplX; 50S ribosomal protein L24
NECEvent2014_8_2_scaffold_568_15
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7326..7694)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=5 Tax=Clostridium RepID=U5MKC8_CLOSA
hypothetical protein
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
NECEvent2014_8_2_scaffold_568_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7722..7976)
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=4 Tax=Clostridium butyricum RepID=B1QYG2_CLOBU
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rpsQ; 30S ribosomal protein S17
NECEvent2014_8_2_scaffold_568_17
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8000..8212)
DNA (213bp) protein (71aa)
50S ribosomal protein L29 n=4 Tax=Clostridium butyricum RepID=B1QYG3_CLOBU
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
50S ribosomal protein L29
NECEvent2014_8_2_scaffold_568_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8212..8646)
DNA (435bp) protein (145aa)
50S ribosomal protein L16 n=4 Tax=Clostridium butyricum RepID=B1QYG4_CLOBU
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplP; 50S ribosomal protein L16
NECEvent2014_8_2_scaffold_568_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8664..9332)
DNA (669bp) protein (223aa)
30S ribosomal protein S3 n=4 Tax=Clostridium butyricum RepID=B1QYG5_CLOBU rbh
30S ribosomal protein S3 {ECO:0000313|EMBL:KHD14881.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rpsC; 30S ribosomal protein S3
NECEvent2014_8_2_scaffold_568_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9356..9691)
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=4 Tax=Clostridium butyricum RepID=B1QYG6_CLOBU
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
rplV; 50S ribosomal protein L22
NECEvent2014_8_2_scaffold_568_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9713..9985)
DNA (273bp) protein (91aa)
30S ribosomal protein S19 n=4 Tax=Clostridium butyricum RepID=B1QYG7_CLOBU
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1
rpsS; 30S ribosomal protein S19
NECEvent2014_8_2_scaffold_568_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10048..10878)
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=4 Tax=Clostridium butyricum RepID=B1QYG8_CLOBU rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplB; 50S ribosomal protein L2
NECEvent2014_8_2_scaffold_568_23
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10943..11239)
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=4 Tax=Clostridium butyricum RepID=B1QYG9_CLOBU
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
rplW; 50S ribosomal protein L23
NECEvent2014_8_2_scaffold_568_24
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11239..11859)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=4 Tax=Clostridium butyricum RepID=B1QYH0_CLOBU rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rplD; 50S ribosomal protein L4
NECEvent2014_8_2_scaffold_568_25
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11885..12514)
DNA (630bp) protein (210aa)
50S ribosomal protein L3 n=2 Tax=Clostridium butyricum RepID=M8J644_CLOBU rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplC; 50S ribosomal protein L3
NECEvent2014_8_2_scaffold_568_26
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12588..12896)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=11 Tax=Clostridium RepID=RS10_CLOB8
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRR
NECEvent2014_8_2_scaffold_568_27
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13546..13641)
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TX06_9CLOT
tuf2; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostrid
Displaying 27 items

View Taxonomy