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NECEvent2014_8_2_scaffold_652

Alias: 178_002_scaffold_652

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_2_scaffold_652_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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252..617
DNA (366bp) protein (122aa)
Chemotaxis protein CheY n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K527_CLOBU
Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY {ECO:0000313|EMBL:KJZ84897.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
response regulator receiver protein
NECEvent2014_8_2_scaffold_652_2
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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823..2388
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KDB5_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ91044.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
glycosyl hydrolases 8 family protein
NECEvent2014_8_2_scaffold_652_trna_1
unknown

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comp(2481..2552)
DNA (72bp)
transferRNA
NECEvent2014_8_2_scaffold_652_3
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2704..3408)
DNA (705bp) protein (235aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1QSF9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ91043.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
NECEvent2014_8_2_scaffold_652_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3695..4603
DNA (909bp) protein (303aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=N9Z8V7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ36170.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ytxC; putative sporulation protein YtxC
NECEvent2014_8_2_scaffold_652_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4792..5286
DNA (495bp) protein (165aa)
Translation initiation factor IF-3 n=3 Tax=Clostridium butyricum RepID=C4IIX7_CLOBU rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
infC; translation initiation factor IF-3
NECEvent2014_8_2_scaffold_652_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5307..5504
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=3 Tax=Clostridium butyricum RepID=C4IIX6_CLOBU
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
rpmI; 50S ribosomal protein L35
NECEvent2014_8_2_scaffold_652_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5536..5892
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=3 Tax=Clostridium butyricum RepID=C4IIX5_CLOBU
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplT; 50S ribosomal protein L20
NECEvent2014_8_2_scaffold_652_8
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5976..7322
DNA (1347bp) protein (449aa)
V-type sodium ATP synthase, J subunit n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J9F3_CLOBU rbh
Potassium uptake protein, integral membrane component, KtrB {ECO:0000313|EMBL:KJZ83568.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
TrkH family potassium uptake protein
NECEvent2014_8_2_scaffold_652_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7434..8138
DNA (705bp) protein (235aa)
Potassium uptake protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JJT1_CLOBU rbh
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:KJZ84896.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. I
potassium uptake protein
NECEvent2014_8_2_scaffold_652_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8080..8904
DNA (825bp) protein (275aa)
ysgA; tRNA/rRNA methyltransferase YsgA (EC:2.1.1.-)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z8L4_CLOBU rbh
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:ETI90725.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum D
NECEvent2014_8_2_scaffold_652_11
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9157..10362
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K521_CLOBU rbh
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:KJZ83569.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;
pyridine nucleotide-disulfide oxidoreductase
NECEvent2014_8_2_scaffold_652_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10923..11942
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
pheS; phenylalanine--tRNA ligase alpha subunit PheS (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=3 Tax=Clostridium butyricum RepID=B1QSU5_CLOBU rbh
Displaying 13 items

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