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NECEvent2014_8_3_scaffold_129

Alias: 178_003_scaffold_129

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_3_scaffold_129_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(108..830)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHM6_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ88464.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
NECEvent2014_8_3_scaffold_129_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1068..1406)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=3 Tax=Clostridium butyricum RepID=B1QVV8_CLOBU
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EEP52693.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 s
glnB1; nitrogen regulatory protein P-II
NECEvent2014_8_3_scaffold_129_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1451..3028)
DNA (1578bp) protein (526aa)
Ammonium transporter n=2 Tax=Clostridium butyricum RepID=B1QVV7_CLOBU rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E
ammonium transporter
NECEvent2014_8_3_scaffold_129_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3089..3415)
DNA (327bp) protein (109aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JMV3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ35441.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_3_scaffold_129_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3800..5212)
DNA (1413bp) protein (471aa)
Beta-glucosidase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z6V8_CLOBU rbh
Beta-glucosidase {ECO:0000313|EMBL:ENZ35440.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
glycoside hydrolase
NECEvent2014_8_3_scaffold_129_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5654..7147
DNA (1494bp) protein (498aa)
Surface protein PspC n=2 Tax=Clostridium butyricum RepID=B1QVV4_CLOBU rbh
Surface protein PspC {ECO:0000313|EMBL:EEP52772.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E B
leucine rich repeat protein
NECEvent2014_8_3_scaffold_129_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7242..9344)
DNA (2103bp) protein (701aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDN0_CLOBU rbh
Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) {ECO:0000313|EMBL:KJZ85084.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
methyl-accepting chemotaxis protein
NECEvent2014_8_3_scaffold_129_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10028..10900)
DNA (873bp) protein (291aa)
Phosphatase YidA n=3 Tax=Clostridium butyricum RepID=B1QVV2_CLOBU rbh
Cof-like hydrolase {ECO:0000313|EMBL:KJZ85109.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
HAD-superfamily hydrolase, subfamily IIB
NECEvent2014_8_3_scaffold_129_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11110..12582)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z6D1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35436.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
glycoside hydrolase family protein
NECEvent2014_8_3_scaffold_129_10
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13051..14406)
DNA (1356bp) protein (452aa)
alpha-galactosidase/6-phospho-beta-glucosidase, family 4 of glycosyl hydrolase (EC:3.2.1.86)
6-phospho-beta-glucosidase (Cellobiose-6-phosphatehydrolase) n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHL7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ92493.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
NECEvent2014_8_3_scaffold_129_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15200..16174)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ARP1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35434.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
permease of the drug/metabolite transporter (DMT) superfamily
NECEvent2014_8_3_scaffold_129_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16667..17362
DNA (696bp) protein (232aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=997
Putative N-acetylmannosamine-6-phosphate epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGD0_CLOBU rbh
NECEvent2014_8_3_scaffold_129_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17422..18309
DNA (888bp) protein (296aa)
N-acetylneuraminate lyase {ECO:0000256|HAMAP-Rule:MF_01237}; Short=NAL {ECO:0000256|HAMAP-Rule:MF_01237};; Short=Neu5Ac lyase {ECO:0000256|HAMAP-Rule:MF_01237};; EC=4.1.3.3 {ECO:0000256|HAMAP-Rule:MF_
N-acetylneuraminate lyase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9C1_CLOBU rbh
nanA; N-acetylneuraminate lyase
NECEvent2014_8_3_scaffold_129_14
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18501..20000
DNA (1500bp) protein (500aa)
Sodium/solute symporter family protein n=3 Tax=Clostridium butyricum RepID=B1QVU5_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ92481.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
Na+/proline symporter
NECEvent2014_8_3_scaffold_129_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20040..20489
DNA (450bp) protein (150aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JDM3_CLOBU rbh
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:KHD15356.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
NECEvent2014_8_3_scaffold_129_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20676..21563
DNA (888bp) protein (296aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.60)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ARN7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35429.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_8_3_scaffold_129_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21623..22450
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGC5_CLOBU rbh
RpiR family transcriptional regulator {ECO:0000313|EMBL:KHD15354.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;
Transcriptional regulators
NECEvent2014_8_3_scaffold_129_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22513..26013)
DNA (3501bp) protein (1167aa)
malS; alpha-amylase MalS (EC:3.2.1.1)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ATQ7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35427.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_8_3_scaffold_129_19
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26588..26875
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QVT9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ92478.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypothetical protein
NECEvent2014_8_3_scaffold_129_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27052..28140)
DNA (1089bp) protein (363aa)
Surface protein PspC n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDL8_CLOBU rbh
Choline binding protein PcpA {ECO:0000313|EMBL:KJZ85095.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
collagenolytic protease
NECEvent2014_8_3_scaffold_129_21
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28341..29798)
DNA (1458bp) protein (486aa)
Polysaccharide biosynthesis protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4ILJ5_CLOBU rbh
Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acid {ECO:0000313|EMBL:KJZ85091.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiac
polysaccharide biosynthesis protein
NECEvent2014_8_3_scaffold_129_22

Not on your lists

30240..30863
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JMS9_CLOBU rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ETJ16693.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transcriptional regulator, TetR family
NECEvent2014_8_3_scaffold_129_23

Not on your lists

30845..31555
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGC0_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ETJ16694.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_8_3_scaffold_129_24
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31856..32554)
DNA (699bp) protein (233aa)
Cholinephosphate cytidylyltransferase {ECO:0000313|EMBL:KJZ85104.1}; EC=2.7.7.15 {ECO:0000313|EMBL:KJZ85104.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Nucleotidyl transferase family protein n=2 Tax=Clostridium butyricum RepID=B1QUF3_CLOBU rbh
phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes
NECEvent2014_8_3_scaffold_129_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32746..34596)
DNA (1851bp) protein (617aa)
Choline/ethanolamine kinase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDL5_CLOBU rbh
Choline kinase {ECO:0000313|EMBL:KHD15346.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
licA; protein LicA
NECEvent2014_8_3_scaffold_129_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35205..35348)
DNA (144bp) protein (48aa)
UPI0003D67350 related cluster n=1 Tax=unknown RepID=UPI0003D67350
Uncharacterized protein {ECO:0000313|EMBL:ENZ30779.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Displaying 26 items

View Taxonomy