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NECEvent2014_8_3_scaffold_78

Alias: 178_003_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_3_scaffold_78_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(542..3061)
DNA (2520bp) protein (840aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=2 Tax=Clostridium perfringens RepID=B1RTP9_CLOPF rbh
NECEvent2014_8_3_scaffold_78_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3083..4999)
DNA (1917bp) protein (639aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=451754 species="Bacteria; Fi
DNA gyrase subunit B n=8 Tax=Clostridium perfringens RepID=Q0TV59_CLOP1 rbh
NECEvent2014_8_3_scaffold_78_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5236..5529)
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1RTQ1_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT70221.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1
NECEvent2014_8_3_scaffold_78_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5510..6595)
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF n=11 Tax=Clostridium perfringens RepID=RECF_CLOP1 rbh
recF; recombination protein F
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
NECEvent2014_8_3_scaffold_78_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6651..6857)
DNA (207bp) protein (69aa)
S4 domain-containing protein n=9 Tax=Clostridium perfringens RepID=H7CRF3_CLOPF
S4 domain-containing protein
S4 domain protein {ECO:0000313|EMBL:EDT22249.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.
NECEvent2014_8_3_scaffold_78_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6983..8083)
DNA (1101bp) protein (367aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=451755 species="Bacter
DNA polymerase III subunit beta n=11 Tax=Clostridium perfringens RepID=H7CRF2_CLOPF rbh
NECEvent2014_8_3_scaffold_78_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8378..9751)
DNA (1374bp) protein (458aa)
Chromosomal replication initiator protein DnaA n=7 Tax=Clostridium perfringens RepID=DNAA_CLOP1 rbh
dnaA; chromosomal replication initiation protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
NECEvent2014_8_3_scaffold_78_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10782..10916
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=11 Tax=Clostridium perfringens RepID=RL34_CLOP1
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000255|HAMAP-Rule:MF_00391}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (stra
NECEvent2014_8_3_scaffold_78_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10977..11354
DNA (378bp) protein (126aa)
rnpA; ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component n=11 Tax=Clostridium perfringens RepID=RNPA_CLOP1
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rul
NECEvent2014_8_3_scaffold_78_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11326..11535
DNA (210bp) protein (70aa)
Putative membrane protein insertion efficiency factor n=11 Tax=Clostridium perfringens RepID=YIDD_CLOP1
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridi
NECEvent2014_8_3_scaffold_78_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11569..12285
DNA (717bp) protein (239aa)
Membrane protein insertase YidC n=3 Tax=Clostridium perfringens RepID=YIDC_CLOPE rbh
spoIIIJ; inner membrane protein translocase component YidC
Membrane protein OxaA {ECO:0000313|EMBL:EDT13624.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS198
NECEvent2014_8_3_scaffold_78_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12327..12950
DNA (624bp) protein (208aa)
SpoIIIJ-associated protein n=3 Tax=Clostridium perfringens RepID=Q8XH29_CLOPE rbh
jag; SpoIIIJ-associated protein
SpoIIIJ-associated protein {ECO:0000313|EMBL:BAB82362.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain
NECEvent2014_8_3_scaffold_78_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13293..14669
DNA (1377bp) protein (459aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; C
tRNA modification GTPase MnmE n=9 Tax=Clostridium perfringens RepID=MNME_CLOP1 rbh
trmE; tRNA modification GTPase TrmE
NECEvent2014_8_3_scaffold_78_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14684..16576
DNA (1893bp) protein (631aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=MNMG_CLOPE rbh
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000255|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000255|HAMAP-Rule:MF_00129}; TaxID=195102 species="Bacter
NECEvent2014_8_3_scaffold_78_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16753..17472
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA
Ribosomal RNA small subunit methyltransferase G n=4 Tax=Clostridium perfringens RepID=H7D011_CLOPF rbh
gidB; 16S rRNA methyltransferase GidB
NECEvent2014_8_3_scaffold_78_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17723..18496
DNA (774bp) protein (258aa)
Sporulation initiation inhibitor protein soj n=10 Tax=Clostridium perfringens RepID=H7D010_CLOPF rbh
soj; sporulation initiation inhibitor protein soj
Sporulation initiation inhibitor protein soj {ECO:0000313|EMBL:EDT13616.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pe
NECEvent2014_8_3_scaffold_78_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18497..19357
DNA (861bp) protein (287aa)
Stage 0 sporulation protein J n=9 Tax=Clostridium perfringens RepID=H7D009_CLOPF rbh
stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:EDT22649.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str
NECEvent2014_8_3_scaffold_78_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19406..19903
DNA (498bp) protein (166aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7D008_CLOPF rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT25916.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_8_3_scaffold_78_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20054..20644)
DNA (591bp) protein (197aa)
Putative sporulation protein YyaC n=2 Tax=Clostridium perfringens RepID=B1V5R5_CLOPF rbh
Putative sporulation protein YyaC {ECO:0000313|EMBL:EDT70844.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D
sporulation protein YyaC
NECEvent2014_8_3_scaffold_78_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20694..21758)
DNA (1065bp) protein (355aa)
Sporulation integral membrane protein YtvI n=4 Tax=Clostridium perfringens RepID=B1RAV4_CLOPF rbh
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:EDT22635.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perf
sporulation integral membrane protein YtvI
NECEvent2014_8_3_scaffold_78_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21770..22930)
DNA (1161bp) protein (387aa)
Cysteine desulfurase family protein n=2 Tax=Clostridium perfringens RepID=B1RJG2_CLOPF rbh
nifS; cysteine desulfurase
Probable aminotransferase required for NAD biosynthesis {ECO:0000313|EMBL:BAB82353.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clo
NECEvent2014_8_3_scaffold_78_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22873..23589)
DNA (717bp) protein (239aa)
LysE family translocator protein n=9 Tax=Clostridium perfringens RepID=H7D004_CLOPF rbh
LysE family translocator protein
Translocator protein, LysE family {ECO:0000313|EMBL:EDT13599.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E
NECEvent2014_8_3_scaffold_78_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23749..23982
DNA (234bp) protein (78aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7D003_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA15778.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_8_3_scaffold_78_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24015..24875
DNA (861bp) protein (287aa)
Mechanosensitive ion channel family protein n=7 Tax=Clostridium perfringens RepID=Q0TM06_CLOP1 rbh
mechanosensitive ion channel family protein
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:EDT13617.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium per
NECEvent2014_8_3_scaffold_78_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24912..25124
DNA (213bp) protein (71aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7D001_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT70820.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1
NECEvent2014_8_3_scaffold_78_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25268..25555
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=11 Tax=Clostridium perfringens RepID=RS6_CLOP1
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str.
NECEvent2014_8_3_scaffold_78_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25569..26021
DNA (453bp) protein (151aa)
Single-stranded DNA-binding protein n=10 Tax=Clostridium perfringens RepID=SSB_CLOPE rbh
ssb; single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=289380 species="Bacteria; Firmicutes; Clostrid
NECEvent2014_8_3_scaffold_78_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26052..26294
DNA (243bp) protein (81aa)
30S ribosomal protein S18 n=11 Tax=Clostridium perfringens RepID=RS18_CLOP1
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.
NECEvent2014_8_3_scaffold_78_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26577..26894
DNA (318bp) protein (106aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CZZ7_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT13480.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
NECEvent2014_8_3_scaffold_78_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26912..27907
DNA (996bp) protein (332aa)
Putative membrane protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BXW1_CLOPF rbh
Putative membrane protein {ECO:0000313|EMBL:EDT13481.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JG
hypothetical protein
Displaying items 1-30 of 48 in total

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