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NECEvent2014_8_3_scaffold_234

Alias: 178_003_scaffold_234

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_3_scaffold_234_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..380
DNA (378bp) protein (126aa)
pyrC; dihydroorotase, multifunctional complex type (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS0008
Dihydroorotase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0STN5_CLOPS
NECEvent2014_8_3_scaffold_234_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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390..1253
DNA (864bp) protein (288aa)
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase; EC=4.1.1.23;; OMP decarboxylase; Short=OMPDCase;; Short=OMPdecase;; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
Orotidine 5'-phosphate decarboxylase n=2 Tax=Clostridium perfringens RepID=PYRF_CLOPE rbh
NECEvent2014_8_3_scaffold_234_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1278..2018
DNA (741bp) protein (247aa)
pyrK; dihydroorotate dehydrogenase electron transfer subunit (EC:1.3.5.2)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0STN7_CLOPS rbh
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=28938
NECEvent2014_8_3_scaffold_234_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2038..2937
DNA (900bp) protein (300aa)
pyrD; dihydroorotate dehydrogenase 1B (EC:1.3.3.1)
Dihydroorotate dehydrogenase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0STN8_CLOPS rbh
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule
NECEvent2014_8_3_scaffold_234_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3088..3666
DNA (579bp) protein (193aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01208}; Short=OPRT {ECO:0000255|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000255|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000255|HAMAP-Rul
Orotate phosphoribosyltransferase n=8 Tax=Clostridium perfringens RepID=PYRE_CLOP1 rbh
NECEvent2014_8_3_scaffold_234_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3990..4412
DNA (423bp) protein (141aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium perfringens RepID=B1BLS1_CLOPF
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EDS79251.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C st
acetyltransferase
NECEvent2014_8_3_scaffold_234_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4635..5387
DNA (753bp) protein (251aa)
xth; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=2 Tax=Clostridium perfringens RepID=H7CVK2_CLOPF rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:EIA17320.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_8_3_scaffold_234_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5418..5954)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=2 Tax=Clostridium perfringens RepID=Q0TRB8_CLOP1 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA17319.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_8_3_scaffold_234_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6125..6859
DNA (735bp) protein (245aa)
Haloacid dehalogenase, IB family protein n=8 Tax=Clostridium perfringens RepID=H7CVK0_CLOPF rbh
haloacid dehalogenase
Haloacid dehalogenase, IB family protein {ECO:0000313|EMBL:EDT70610.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfri
NECEvent2014_8_3_scaffold_234_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7210..7593
DNA (384bp) protein (128aa)
Mutator mutT-like protein n=7 Tax=Clostridium perfringens RepID=H7CVJ9_CLOPF
mutator mutT-like protein
Mutator mutT protein homolog {ECO:0000313|EMBL:EDT15729.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str.
NECEvent2014_8_3_scaffold_234_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7656..7874
DNA (219bp) protein (73aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=H7CVJ8_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26048.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_8_3_scaffold_234_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7907..8551)
DNA (645bp) protein (215aa)
Uncharacterized protein n=4 Tax=Clostridium perfringens RepID=H7CVJ7_CLOPF rbh
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EDT24422.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. AT
NECEvent2014_8_3_scaffold_234_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8827..9159
DNA (333bp) protein (111aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=H7CVJ6_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT24369.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC
NECEvent2014_8_3_scaffold_234_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9194..10414)
DNA (1221bp) protein (407aa)
Sodium:dicarboxylate symporter family protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TRC4_CLOP1 rbh
sodium:dicarboxylate symporter family protein
Probable glutamate/ aspartate transporter {ECO:0000313|EMBL:BAB80873.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfr
NECEvent2014_8_3_scaffold_234_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10917..12386
DNA (1470bp) protein (490aa)
Putative lysine-specific permease n=4 Tax=Clostridium perfringens RepID=Q0TRC5_CLOP1 rbh
lysine-specific permease
Putative lysine-specific permease {ECO:0000313|EMBL:EDT25422.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C
NECEvent2014_8_3_scaffold_234_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12427..13626)
DNA (1200bp) protein (400aa)
tdcB; threonine dehydratase (EC:4.3.1.19)
Threonine dehydratase n=3 Tax=Clostridium perfringens RepID=H7CVI7_CLOPF rbh
Threonine dehydratase, catabolic {ECO:0000313|EMBL:EDT22219.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B
NECEvent2014_8_3_scaffold_234_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13754..13972
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TRC7_CLOP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA17304.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_8_3_scaffold_234_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14474..15826
DNA (1353bp) protein (451aa)
Probable integrase/recombinase n=2 Tax=Clostridium perfringens RepID=Q8XL79_CLOPE rbh
xerC; site-specific tyrosine recombinase XerC
Probable integrase/recombinase {ECO:0000313|EMBL:BAB80869.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (str
NECEvent2014_8_3_scaffold_234_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15917..16309)
DNA (393bp) protein (131aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=H7CVI4_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA17302.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_8_3_scaffold_234_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16516..17127
DNA (612bp) protein (204aa)
lexA; LexA repressor (EC:3.4.21.88) rbh
LexA repressor {ECO:0000255|HAMAP-Rule:MF_00015}; EC=3.4.21.88 {ECO:0000255|HAMAP-Rule:MF_00015};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
LexA repressor n=2 Tax=Clostridium perfringens RepID=LEXA_CLOPE rbh
NECEvent2014_8_3_scaffold_234_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17326..18231)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RBK3_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT22391.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC
hypothetical protein
NECEvent2014_8_3_scaffold_234_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18492..19772)
DNA (1281bp) protein (427aa)
Aluminum resistance protein n=3 Tax=Clostridium perfringens RepID=B1RBK2_CLOPF rbh
Aluminum resistance protein {ECO:0000313|EMBL:EDT22395.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str.
aluminum resistance protein
NECEvent2014_8_3_scaffold_234_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19877..20119)
DNA (243bp) protein (81aa)
RNA-binding protein Hfq n=9 Tax=Clostridium perfringens RepID=HFQ_CLOP1
RNA chaperone Hfq
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
NECEvent2014_8_3_scaffold_234_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20163..21095)
DNA (933bp) protein (311aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RBK0_CLOPF rbh
NECEvent2014_8_3_scaffold_234_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21113..23137)
DNA (2025bp) protein (675aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=MUTL_CLOPE rbh
DNA mismatch repair protein MutL {ECO:0000255|HAMAP-Rule:MF_00149}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringen
mutL; DNA mismatch repair protein
NECEvent2014_8_3_scaffold_234_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23164..25893)
DNA (2730bp) protein (910aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V5J4_CLOPF rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
mutS; DNA mismatch repair protein MutS
NECEvent2014_8_3_scaffold_234_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26157..26240)
DNA (84bp) protein (28aa)
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridi
Pyruvate formate-lyase activating enzyme n=2 Tax=Clostridium perfringens RepID=Q0TRD7_CLOP1
Displaying 27 items

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