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NECEvent2014_8_3_scaffold_936

Alias: 178_003_scaffold_936

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_3_scaffold_936_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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91..825
DNA (735bp) protein (245aa)
truA; tRNA pseudouridine(38-40) synthase (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:AIY83113.1};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rul
tRNA pseudouridine synthase A n=1 Tax=Clostridium colicanis 209318 RepID=N9WCL0_9CLOT rbh
NECEvent2014_8_3_scaffold_936_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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989..1423
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H675_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplM; 50S ribosomal protein L13
NECEvent2014_8_3_scaffold_936_3
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1449..1841
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEC1_9CLOT
ribosomal S9/S16 family protein
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
NECEvent2014_8_3_scaffold_936_4
unknown

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comp(1935..2180)
DNA (246bp) protein (82aa)

This feature has no annotations

NECEvent2014_8_3_scaffold_936_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2695..4296
DNA (1602bp) protein (534aa)
Na/Pi-cotransporter family protein/PhoU family protein n=2 Tax=Clostridium botulinum E RepID=B2UYE7_CLOBA rbh
Na/Pi-cotransporter family protein/PhoU family protein
Sodium-dependent phosphate transporter {ECO:0000313|EMBL:KIL08577.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.
NECEvent2014_8_3_scaffold_936_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4397..5047
DNA (651bp) protein (217aa)
cwlD; N-acetylmuramoyl-L-alanine amidase CwlD (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase CwlD n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKK7_9CLOT
N-acetylmuramoyl-L-alanine amidase CwlD {ECO:0000313|EMBL:EKQ52170.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
NECEvent2014_8_3_scaffold_936_7
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5188..6030
DNA (843bp) protein (281aa)
putative fumarate hydratase subunit alpha (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TYF7_9CLOT
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily {ECO:0000313|EMBL:EKQ52172.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostr
NECEvent2014_8_3_scaffold_936_8
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6040..6603
DNA (564bp) protein (188aa)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LPV0_CLOB8
fumarate hydratase
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit {ECO:0000313|EMBL:ABR32380.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
NECEvent2014_8_3_scaffold_936_9
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6620..7477)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXW3_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ00734.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
NECEvent2014_8_3_scaffold_936_10
unknown

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7606..7770
DNA (165bp) protein (55aa)

This feature has no annotations

NECEvent2014_8_3_scaffold_936_11
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7857..8522
DNA (666bp) protein (222aa)
Regulatory protein VanR n=4 Tax=Clostridium butyricum RepID=B1QZU8_CLOBU
DNA-binding response regulator {ECO:0000313|EMBL:KJZ94288.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
Displaying 11 items

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