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NECEvent2014_8_3_Clostridium_paraputrificum_30_11

NECEvent2014_8_3_Clostridium_30_12
In projects: NECEvent2014_8_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Based on gyrA

Displaying items 351-400 of 655 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_3_scaffold_786 178_003_scaffold_786
Genus: Clostridium (85.71%)
7 10334 bp 29.42 12.80 90.34
NECEvent2014_8_3_scaffold_863 178_003_scaffold_863
Genus: Clostridium (100%)
7 9384 bp 30.05 11.86 90.31
NECEvent2014_8_3_scaffold_2060 178_003_scaffold_2060
Species: Clostridium sp. 7_2_43FAA (66.67%)
3 3321 bp 28.36 9.98 90.24
NECEvent2014_8_3_scaffold_755 178_003_scaffold_755
Genus: Clostridium (85.71%)
14 10826 bp 30.93 12.18 90.23
NECEvent2014_8_3_scaffold_1398 178_003_scaffold_1398
Species: Clostridium baratii (50%)
6 5451 bp 31.50 11.34 90.20
NECEvent2014_8_3_scaffold_2084 178_003_scaffold_2084
Species: Clostridium baratii (50%)
4 3286 bp 27.30 10.86 90.20
NECEvent2014_8_3_scaffold_988 178_003_scaffold_988
Species: Clostridium chauvoei (60%)
5 8087 bp 30.51 12.09 90.18
NECEvent2014_8_3_scaffold_1383 178_003_scaffold_1383
Genus: Clostridium (100%)
3 5499 bp 31.77 11.21 90.18
NECEvent2014_8_3_scaffold_956 178_003_scaffold_956
Genus: Clostridium (50%)
8 8321 bp 30.10 12.55 90.17
NECEvent2014_8_3_scaffold_1627 178_003_scaffold_1627
Order: Clostridiales (100%)
3 4515 bp 30.43 12.06 90.17
NECEvent2014_8_3_scaffold_1006 178_003_scaffold_1006
Genus: Clostridium (66.67%)
6 7963 bp 31.83 14.88 90.12
NECEvent2014_8_3_scaffold_1347 178_003_scaffold_1347
Species: Clostridium perfringens (50%)
6 5681 bp 31.63 11.80 90.09
NECEvent2014_8_3_scaffold_2145 178_003_scaffold_2145
Genus: Clostridium (75%)
4 3137 bp 29.71 13.53 90.09
NECEvent2014_8_3_scaffold_1444 178_003_scaffold_1444
Genus: Clostridium (75%)
8 5222 bp 29.36 11.75 90.08
NECEvent2014_8_3_scaffold_2319 178_003_scaffold_2319
Species: Clostridium sp. CAG:221 (66.67%)
3 2828 bp 28.04 7.85 90.06
NECEvent2014_8_3_scaffold_184 178_003_scaffold_184
Genus: Clostridium (76.67%)
30 29639 bp 30.20 13.28 89.96
NECEvent2014_8_3_scaffold_1763 178_003_scaffold_1763
Genus: Clostridium (60%)
5 4083 bp 29.83 12.05 89.93
NECEvent2014_8_3_scaffold_3446 178_003_scaffold_3446
Species: Clostridium saccharoperbutylacetonicum (50%)
2 1672 bp 25.48 8.16 89.89
NECEvent2014_8_3_scaffold_1195 178_003_scaffold_1195
Genus: Clostridium (81.82%)
11 6588 bp 29.52 9.45 89.85
NECEvent2014_8_3_scaffold_2139 178_003_scaffold_2139
Genus: Clostridium (100%)
4 3150 bp 29.05 13.00 89.81
NECEvent2014_8_3_scaffold_975 178_003_scaffold_975
Genus: Clostridium (87.5%)
8 8187 bp 27.81 10.53 89.78
NECEvent2014_8_3_scaffold_1250 178_003_scaffold_1250
Genus: Clostridium (60%)
5 6170 bp 30.86 13.06 89.76
NECEvent2014_8_3_scaffold_1895 178_003_scaffold_1895
Species: Clostridium baratii (50%)
4 3737 bp 31.79 12.20 89.75
NECEvent2014_8_3_scaffold_1779 178_003_scaffold_1779
Genus: Clostridium (50%)
4 4026 bp 29.76 12.74 89.72
NECEvent2014_8_3_scaffold_1621 178_003_scaffold_1621
Genus: Clostridium (75%)
4 4529 bp 29.72 12.82 89.69
NECEvent2014_8_3_scaffold_680 178_003_scaffold_680
Genus: Clostridium (70%)
10 12024 bp 30.51 12.84 89.67
NECEvent2014_8_3_scaffold_2858 178_003_scaffold_2858
Species: Clostridium chauvoei (66.67%)
3 2152 bp 29.18 12.27 89.64
NECEvent2014_8_3_scaffold_2091 178_003_scaffold_2091
Species: Clostridium saccharobutylicum (50%)
4 3274 bp 33.48 13.42 89.62
NECEvent2014_8_3_scaffold_3420 178_003_scaffold_3420
Species: Clostridium sp. DL-VIII (50%)
2 1694 bp 30.64 8.94 89.61
NECEvent2014_8_3_scaffold_1504 178_003_scaffold_1504
Species: Clostridium celatum (60%)
5 4935 bp 35.40 17.57 89.60
NECEvent2014_8_3_scaffold_2970 178_003_scaffold_2970
Genus: Clostridium (100%)
3 2046 bp 28.69 10.41 89.59
NECEvent2014_8_3_scaffold_259 178_003_scaffold_259
Genus: Clostridium (85.71%)
21 24835 bp 32.71 13.84 89.55
NECEvent2014_8_3_scaffold_2634 178_003_scaffold_2634
Genus: Clostridium (66.67%)
3 2399 bp 30.22 13.01 89.54
NECEvent2014_8_3_scaffold_3104 178_003_scaffold_3104
Species: Clostridium botulinum (50%)
2 1927 bp 32.75 11.44 89.52
NECEvent2014_8_3_scaffold_884 178_003_scaffold_884
Genus: Clostridium (66.67%)
6 9158 bp 30.21 13.12 89.51
NECEvent2014_8_3_scaffold_1127 178_003_scaffold_1127
Genus: Clostridium (100%)
6 7047 bp 30.15 15.03 89.48
NECEvent2014_8_3_scaffold_777 178_003_scaffold_777
Order: Clostridiales (87.5%)
8 10442 bp 30.59 12.01 89.44
NECEvent2014_8_3_scaffold_2447 178_003_scaffold_2447
Genus: Clostridium (66.67%)
3 2633 bp 29.32 11.68 89.33
NECEvent2014_8_3_scaffold_659 178_003_scaffold_659
Genus: Clostridium (66.67%)
12 12315 bp 29.01 11.39 89.31
NECEvent2014_8_3_scaffold_647 178_003_scaffold_647
Genus: Clostridium (81.82%)
11 12510 bp 26.87 10.41 89.28
NECEvent2014_8_3_scaffold_1088 178_003_scaffold_1088
Order: Clostridiales (57.14%)
7 7318 bp 32.19 11.46 89.25
NECEvent2014_8_3_scaffold_1549 178_003_scaffold_1549
Genus: Clostridium (83.33%)
6 4813 bp 30.15 13.90 89.20
NECEvent2014_8_3_scaffold_1055 178_003_scaffold_1055
Genus: Clostridium (50%)
10 7524 bp 30.81 10.57 89.19
NECEvent2014_8_3_scaffold_954 178_003_scaffold_954
Species: Clostridium baratii (71.43%)
7 8333 bp 30.54 12.40 89.18
NECEvent2014_8_3_scaffold_2691 178_003_scaffold_2691
Genus: Clostridium (50%)
4 2345 bp 25.63 9.08 89.17
NECEvent2014_8_3_scaffold_1376 178_003_scaffold_1376
Genus: Clostridium (83.33%)
6 5545 bp 28.58 9.55 89.16
NECEvent2014_8_3_scaffold_1083 178_003_scaffold_1083
Species: Clostridium baratii (50%)
6 7338 bp 32.00 13.74 89.13
NECEvent2014_8_3_scaffold_1726 178_003_scaffold_1726
Genus: Clostridium (100%)
6 4191 bp 27.77 9.38 89.12
NECEvent2014_8_3_scaffold_1761 178_003_scaffold_1761
Genus: Clostridium (100%)
3 4087 bp 29.43 10.06 89.11
NECEvent2014_8_3_scaffold_1607 178_003_scaffold_1607
Genus: Clostridium (100%)
4 4593 bp 31.55 15.48 89.09
Displaying items 351-400 of 655 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.