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NECEvent2014_8_3_Clostridium_paraputrificum_30_11

NECEvent2014_8_3_Clostridium_30_12
In projects: NECEvent2014_8_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Based on gyrA

Displaying items 1-50 of 655 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_3_scaffold_3878 178_003_scaffold_3878
Species: Clostridium chauvoei (50%)
2 1428 bp 34.31 18.70 71.50
NECEvent2014_8_3_scaffold_2160 178_003_scaffold_2160
Genus: Clostridium (60%)
5 3110 bp 28.23 18.23 54.15
NECEvent2014_8_3_scaffold_2269 178_003_scaffold_2269
Genus: Clostridium (100%)
3 2915 bp 30.02 18.22 90.87
NECEvent2014_8_3_scaffold_4529 178_003_scaffold_4529
Species: Clostridium chauvoei (50%)
2 1139 bp 30.82 17.65 64.79
NECEvent2014_8_3_scaffold_1504 178_003_scaffold_1504
Species: Clostridium celatum (60%)
5 4935 bp 35.40 17.57 89.60
NECEvent2014_8_3_scaffold_2500 178_003_scaffold_2500
Phylum: Firmicutes (60%)
5 2563 bp 28.72 17.44 96.45
NECEvent2014_8_3_scaffold_2324 178_003_scaffold_2324
Species: Clostridium baratii (50%)
4 2820 bp 30.82 16.65 73.72
NECEvent2014_8_3_scaffold_2259 178_003_scaffold_2259
Genus: Clostridium (50%)
4 2923 bp 32.54 16.63 73.18
NECEvent2014_8_3_scaffold_1372 178_003_scaffold_1372
Genus: Clostridium (100%)
8 5562 bp 33.84 16.53 80.74
NECEvent2014_8_3_scaffold_966 178_003_scaffold_966
Order: Clostridiales (80%)
10 8265 bp 35.49 16.44 78.98
NECEvent2014_8_3_scaffold_898 178_003_scaffold_898
Genus: Clostridium (55.56%)
9 9066 bp 24.67 16.21 97.29
NECEvent2014_8_3_scaffold_1757 178_003_scaffold_1757
Species: Clostridium sulfidigenes (66.67%)
3 4098 bp 32.36 16.11 87.85
NECEvent2014_8_3_scaffold_631 178_003_scaffold_631
Order: Clostridiales (66.67%)
9 12768 bp 28.02 15.92 75.14
NECEvent2014_8_3_scaffold_592 178_003_scaffold_592
Genus: Clostridium (71.43%)
14 13766 bp 30.83 15.89 88.83
NECEvent2014_8_3_scaffold_1024 178_003_scaffold_1024
Genus: Clostridium (66.67%)
9 7789 bp 30.63 15.70 84.62
NECEvent2014_8_3_scaffold_1803 178_003_scaffold_1803
Genus: Clostridium (100%)
5 3942 bp 31.74 15.68 93.68
NECEvent2014_8_3_scaffold_1773 178_003_scaffold_1773
Genus: Clostridium (100%)
3 4051 bp 31.65 15.55 93.24
NECEvent2014_8_3_scaffold_1382 178_003_scaffold_1382
Genus: Clostridium (100%)
11 5504 bp 34.76 15.51 85.57
NECEvent2014_8_3_scaffold_1607 178_003_scaffold_1607
Genus: Clostridium (100%)
4 4593 bp 31.55 15.48 89.09
NECEvent2014_8_3_scaffold_1517 178_003_scaffold_1517
Genus: Clostridium (85.71%)
7 4899 bp 30.66 15.31 84.22
NECEvent2014_8_3_scaffold_2869 178_003_scaffold_2869
Species: Clostridium beijerinckii (50%)
2 2144 bp 31.06 15.25 88.15
NECEvent2014_8_3_scaffold_2130 178_003_scaffold_2130
Species: Clostridium paraputrificum (100%)
2 3172 bp 34.27 15.04 99.40
NECEvent2014_8_3_scaffold_1127 178_003_scaffold_1127
Genus: Clostridium (100%)
6 7047 bp 30.15 15.03 89.48
NECEvent2014_8_3_scaffold_1243 178_003_scaffold_1243
Genus: Clostridium (100%)
11 6232 bp 33.63 14.97 88.24
NECEvent2014_8_3_scaffold_1861 178_003_scaffold_1861
Genus: Clostridium (66.67%)
6 3817 bp 26.64 14.93 81.84
NECEvent2014_8_3_scaffold_2309 178_003_scaffold_2309
Species: Clostridium saccharobutylicum (100%)
1 2855 bp 32.22 14.92 95.73
NECEvent2014_8_3_scaffold_2416 178_003_scaffold_2416
Genus: Clostridium (100%)
3 2674 bp 29.51 14.92 88.07
NECEvent2014_8_3_scaffold_1006 178_003_scaffold_1006
Genus: Clostridium (66.67%)
6 7963 bp 31.83 14.88 90.12
NECEvent2014_8_3_scaffold_1664 178_003_scaffold_1664
Genus: Clostridium (100%)
3 4398 bp 32.88 14.80 88.54
NECEvent2014_8_3_scaffold_1174 178_003_scaffold_1174
Species: Clostridium bornimense (50%)
4 6698 bp 31.47 14.74 85.68
NECEvent2014_8_3_scaffold_1036 178_003_scaffold_1036
Genus: Clostridium (77.78%)
9 7666 bp 30.50 14.68 98.15
NECEvent2014_8_3_scaffold_1807 178_003_scaffold_1807
Species: Clostridium baratii (50%)
2 3933 bp 33.97 14.57 96.57
NECEvent2014_8_3_scaffold_1637 178_003_scaffold_1637
Genus: Clostridium (100%)
4 4485 bp 32.06 14.45 91.77
NECEvent2014_8_3_scaffold_2302 178_003_scaffold_2302
Genus: Clostridium (66.67%)
3 2860 bp 31.47 14.42 94.72
NECEvent2014_8_3_scaffold_1473 178_003_scaffold_1473
Genus: Clostridium (100%)
8 5090 bp 31.14 14.41 79.10
NECEvent2014_8_3_scaffold_1643 178_003_scaffold_1643
Species: Clostridium baratii (50%)
4 4477 bp 31.74 14.41 90.66
NECEvent2014_8_3_scaffold_1070 178_003_scaffold_1070
Genus: Clostridium (100%)
6 7402 bp 29.88 14.33 76.80
NECEvent2014_8_3_scaffold_468 178_003_scaffold_468
Genus: Clostridium (94.74%)
19 16971 bp 30.73 14.30 86.95
NECEvent2014_8_3_scaffold_1312 178_003_scaffold_1312
Genus: Clostridium (50%)
6 5811 bp 30.61 14.25 93.96
NECEvent2014_8_3_scaffold_853 178_003_scaffold_853
Species: Clostridium baratii (85.71%)
7 9488 bp 30.80 14.24 94.35
NECEvent2014_8_3_scaffold_1972 178_003_scaffold_1972
Genus: Clostridium (66.67%)
3 3545 bp 29.03 14.22 82.51
NECEvent2014_8_3_scaffold_2571 178_003_scaffold_2571
Genus: Clostridium (75%)
4 2479 bp 30.17 14.16 84.23
NECEvent2014_8_3_scaffold_3387 178_003_scaffold_3387
Species: Clostridium baratii (100%)
2 1718 bp 30.21 14.14 99.01
NECEvent2014_8_3_scaffold_1177 178_003_scaffold_1177
Genus: Clostridium (100%)
4 6682 bp 33.79 14.12 92.44
NECEvent2014_8_3_scaffold_1104 178_003_scaffold_1104
Genus: Clostridium (60%)
5 7210 bp 29.25 14.11 95.64
NECEvent2014_8_3_scaffold_1148 178_003_scaffold_1148
Genus: Clostridium (80%)
5 6915 bp 30.66 14.10 83.77
NECEvent2014_8_3_scaffold_1224 178_003_scaffold_1224
Genus: Clostridium (100%)
5 6389 bp 31.55 14.09 83.39
NECEvent2014_8_3_scaffold_4408 178_003_scaffold_4408
Species: Clostridium baratii (100%)
1 1193 bp 33.78 14.08 87.51
NECEvent2014_8_3_scaffold_1388 178_003_scaffold_1388
Genus: Clostridium (100%)
8 5494 bp 33.02 14.06 96.65
NECEvent2014_8_3_scaffold_4463 178_003_scaffold_4463
Species: Clostridium celatum (100%)
1 1166 bp 33.02 14.02 99.83
Displaying items 1-50 of 655 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.