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NECEvent2014_8_4_scaffold_662_8

Organism: NECEvent2014_8_4_Clostridium_perfringens_30_8

near complete RP 49 / 55 MC: 1 BSCG 49 / 51 MC: 1 ASCG 15 / 38 MC: 1
Location: 3958..7662

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2443
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2443
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=5 Tax=Clostridium perfringens RepID=RPOB_CLOP1 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2443
  • Evalue 0.0
  • rbh

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Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3705
ATGGTACATCCTGTCCAAGTTGGAAAAAGAACGAGAATGAGCTTTGCAAAAGTCAAAGACGTGGCTGAAATGCCAAACCTAATTGAAATTCAATTAGATTCTTACAAATGGTTTTTAGATGCAGGACTTTATGAAGTTTTTGATGATATTAATCCTATCTCAAACTTTACTGGAAATCTTGTACTTGAGTTTGTAGGGTACACTCTAGATATGGATAACATAAAATATTCAGTTGAAGAGTGTAAAGAAAGAGACACTACTTATGCTGCACCGCTAAAAGTAGCTGTAAGACTTCAAAACAAAGAAACTGGAGAAATAAAAGAACAAGAGGTATTTATGGGAGATTTCCCATTAATGACAGAGCAAGGAACTTTTATAATCAATGGTGCCGAAAGAGTTATTGTTTCTCAGTTAGTAAGATCACCAGGTGTTTACTACAATTATAATGTAGATAAAACTGGTAAAAAACTGTTCTCTGCAACAGTAATACCTAACAGAGGTGCATGGTTAGAGTATGAAACAGATTCAAATGATGTTATCTATGTAAGAATAGATAAAACAAGAAAACTTCCTATAAGTATACTAGGAAGAGCTATGGGCTTTGGAAGCGATCAAGAACTTCTTGAGTATTTTGGTGAAGAAGAAAGATTCAAAGCTACAATAGAAAAAGATAATACTAAGACTAAAGAAGAAGCATTATTAGAAATATATAAGAGATTAAGACCAGGTGAACCACCTACAGTTGATAGTGCAATTAGTTTAATAGATTCTCTATTCTTCGATGCTAAGAGATACGACTTATCAAGAGTTGGTAGATACAAGTTTAACAAAAAACTTGCAATTGGTTTAAGAATAGCTAACCAAATAGCAGCAGAAGATATAGTAGATAAATTAACTGGTGAAGTTTTAGTTGCAAAAGGTGAAAAAATATCAAGAGCTAATGCTGAAGAAATCCAAAATAGAGGAATAAATTCAGTTGATGTTTTAGTTGAAGACAGAGTAATTAGAATTATTGGTAACCACTTTGTAGATATACATAAGTGTGTGGACTTCGATATATCAGATTTAAATATCAGAGAATTAGTTCACTACCCAACATTAAGAGAAATCTTAGATAACTATTCTGATGAAGAAACTATAAAAGAAGAAATCAAAAAGAATATGACAAGACTTATTCCTAAGCACATCATCAAAGATGATATATTCGCTACAATAAGTTACCAAATTGGCTTAGCTTATAATATTGGATATGTTGATGATATAGATCACTTAGGAAACAGAAGATTAAGAAGTGTTGGTGAGCTTTTACAAAATCAATTTAGAATTGGTTTATCAAGAATGGAAAGAGTAGTTAAAGAGAGAATGACTATTCAAGACCAAGAAGCTATAACACCACAACAATTAATCAATATAAGACCAGTAGCAGCAGCTATAAAAGAGTTCTTTGGAAGCTCACAGTTATCACAGTTCATGGATCAAACAAACCCATTATCTGAGTTAACTCATAAGAGAAGATTATCAGCTCTTGGACCAGGAGGTCTTTCAAGAGAAAGAGCTGGTTTCGAAGTTAGAGACGTTCACCACTCTCATTATGGTAGAATGTGTCCTATCGAGACTCCAGAGGGACCAAACATAGGTCTTATAAACTCATTAGCTACATATGCTAAAGTTAATGAGTATGGCTTTATTGAAACTCCTTATAGAGTTGTAGATAAAGCAGAAGGTAGAGTAACTGGCGAAATAAGATACTTTACTGCAGATGAGGAAGACCAATACCTAGTAGCTCAGGCTAATGAACCATTAGACGAAAATGGATGCTTTATTGATAAGAAAGTAACTGTTAGAGATAAAGGTGAGGTATTAGTAGTTCCAAGTAAGGATGTTGACTTAATGGACGTTTCTCCAAGACAGCTAGTATCTGTTGCAACAGCAATGATACCTTTCTTAGAGAACGATGACGCATCAAGAGCCCTAATGGGATCAAACATGCAACGTCAAGCAGTTCCTTTATTAAAACCATATGCTCCAATAGTTGGTACTGGAATAGAATACAAAGCAGCTGTAGATTCAGGGGTTCTTCCTAAAGCTAAAAATGCTGGTGAAGTAGTTTATGTAAGTGCTAATGAAGTAAGAGTTAAGAGAGAATTAGATGGTGGTGTTGATACTTATAGACTTCTTAAATTCAAGAGAAGTAACCAAGGTACTTGTATAAACCAAAGACCAATAGTGGCTAAAGGTGACTGGGTACTTAAAGGTGAAGTATTAGCAGATGGACCTTCAACTGATTTAGGAGAAATAGCTTTAGGTAAAAACATAAGAATGGGATTCATTACTTGGGAAGGATATAACTACGAGGATGCTATGCTTATCTCAGAAGAGTTAGTTAGAGAAGACGTATTTACATCAATCCATATAGAAGAATATGAATGCGAAGCTAGAGATACTAAATTAGGACCAGAAGAAATAACTAGAGATATTCCAAACGTAAGTGAGGATGCTTTAAAAGATATAGATGAAAGAGGTATAATCAGAATCGGTGCTGAGGTAAGATCAGGAGATATTCTTGTTGGTAAAGTAACACCAAAAGGAGAAACTGAACTTACTGCTGAGGAAAGATTATTAAGAGCTATCTTTGGTGAAAAAGCTAGAGAAGTTAGAGATACTTCTTTAAGAGTTCCACACGGGGAAGCTGGTATAATAGTAGATGTAAAAGTATTTACAAGAGAAAATGGTGATGATTTATCACCAGGAGTTAATGAACTTGTAAGATGTTACATTGCTCAAAAGAGAAAAATATCTGTTGGAGATAAGATGGCTGGTCGTCACGGTAACAAAGGGGTTATCTCAAGAGTATTACCAGAAGAAGATATGCCATTCTTACCAGATGGTAGACCACTTCAAATATGCTTAAACCCACTAGGGGTTCCATCTCGTATGAACATCGGTCAGGTATTAGAGGTTCACTTAGGATGGGCTGCAAGTGCATTAGGATGGCACATTGCTACACCAGTATTTGATGGTGCTACAGAAACTGATATAGAAGATTGCTTAGAAAAAGCAGGATACAATAGAAACGGAAAAACAGTTTTAAGAGATGGTAGAACTGGTGAAGAGTTTGATAACGAAGTAACAGTTGGTATAATGTACATCTTAAAACTTGCTCACTTAGTTGATGATAAGATCCATGCTAGATCAACAGGACCTTACTCATTAGTAACTCAACAGCCACTTGGTGGTAAGGCACAATTCGGAGGACAAAGATTCGGAGAGATGGAGGTTTGGGCATTAGAAGCATACGGTGCTGCTCATACTCTTCAAGAAATACTTACTGTTAAGTCAGATGATGTTGTAGGTAGAGTTAAAACTTACGAAGCTATTGTTAAAGGTGAAAACATTCCTGAACCAGGAGTGCCAGAATCATTTAAGGTTCTTATTAAAGAACTTCAAGCTTTATGCTTAGACGTTAAAGTTTTAAATGATAATAACCAAGAAGTTAAATTCAAAGAATTAGCTGAAGATGATGATGAAATCGAAGTATTAGAAGTTAACATGGAAGGTACTGAAGATTCAACAACAGAAGAAGCTAAAGAGGAAAAAGGGGAAGCATACATCCCAGCAGAAGAAATTGATGAAGAAATAGACTATGAAAACATAGACTTATTAGACTTCACAAGTGATTTAGACATAGAAGATGATTTTAACTAG
PROTEIN sequence
Length: 1235
MVHPVQVGKRTRMSFAKVKDVAEMPNLIEIQLDSYKWFLDAGLYEVFDDINPISNFTGNLVLEFVGYTLDMDNIKYSVEECKERDTTYAAPLKVAVRLQNKETGEIKEQEVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYNVDKTGKKLFSATVIPNRGAWLEYETDSNDVIYVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNTKTKEEALLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLAIGLRIANQIAAEDIVDKLTGEVLVAKGEKISRANAEEIQNRGINSVDVLVEDRVIRIIGNHFVDIHKCVDFDISDLNIRELVHYPTLREILDNYSDEETIKEEIKKNMTRLIPKHIIKDDIFATISYQIGLAYNIGYVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEAITPQQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFIETPYRVVDKAEGRVTGEIRYFTADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVVPSKDVDLMDVSPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIEYKAAVDSGVLPKAKNAGEVVYVSANEVRVKRELDGGVDTYRLLKFKRSNQGTCINQRPIVAKGDWVLKGEVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGDDLSPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASALGWHIATPVFDGATETDIEDCLEKAGYNRNGKTVLRDGRTGEEFDNEVTVGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDNNQEVKFKELAEDDDEIEVLEVNMEGTEDSTTEEAKEEKGEAYIPAEEIDEEIDYENIDLLDFTSDLDIEDDFN*