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NECEvent2014_8_4_scaffold_4600_2

Organism: NECEvent2014_8_4_Clostridium_perfringens_30_8

near complete RP 49 / 55 MC: 1 BSCG 49 / 51 MC: 1 ASCG 15 / 38 MC: 1
Location: comp(249..956)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=11 Tax=Clostridium perfringens RepID=H7CXF7_CLOPF similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 451
  • Evalue 6.40e-124
  • rbh
sigE; sporulation sigma factor SigE similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 451
  • Evalue 1.80e-124
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 451
  • Evalue 9.00e-124

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Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 708
ATGTTAAATATAAGACTTTTGCTTAATAAGTTATTTACTAAATTAGATATTATGGTAGAACCAATTTATTATGTTGGGGGGAATGATGTTCTTCCAGCACCTCTTAGTAAGGAAGAGGAAGAGGAGTTAGTTAACAAATTAGGGGAGAATGATGAAGCTATTAGAAGTATTCTTATTGAGAGAAATTTAAGACTAGTTGTATATATAGCTAGAAAATTTGAGAATACTGGTGTAGGAGTTGAGGATTTAATTTCTGTAGGAACAATTGGACTTATAAAGGCAGTAAATACATTTAATCCTGAAAAAAAGATAAAGCTTGCAACCTATGCATCAAGATGTATAGAAAATGAAATTCTTATGTATTTAAGGAGAAATAGCAAGGTTAAAGCTGAGATATCATTTTATGAGCCCTTAAATATAGATTGGGATGGAAATGAACTTTTACTTTCAGATATACTTGGCACAGATGATGATATTGTTTACAATCTGATAGAAGATGAAGTTGACAAGGAATTATTATTTACTGCAATGAAGAATCTTTCAAATAGAGAAAAAGAAATTGTTGAATTAAGATTTGGACTATGTGGATATAAAGAAAAAACTCAAAAGGAAGTAGCTGATATGCTAGGAATATCTCAATCTTATATTTCAAGATTAGAGAAGAAAATTATAAAAAGATTAAAGAAAGAAATTAACAAAATGATTTAA
PROTEIN sequence
Length: 236
MLNIRLLLNKLFTKLDIMVEPIYYVGGNDVLPAPLSKEEEEELVNKLGENDEAIRSILIERNLRLVVYIARKFENTGVGVEDLISVGTIGLIKAVNTFNPEKKIKLATYASRCIENEILMYLRRNSKVKAEISFYEPLNIDWDGNELLLSDILGTDDDIVYNLIEDEVDKELLFTAMKNLSNREKEIVELRFGLCGYKEKTQKEVADMLGISQSYISRLEKKIIKRLKKEINKMI*