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NECEvent2014_8_4_Clostridium_perfringens_30_8

NECEvent2014_8_4_Clostridium_perfringens_30_11
In projects: NECEvent2014_8_4

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 301-350 of 810 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_1020 178_004_scaffold_1020
Species: Clostridium perfringens (100%)
7 6406 bp 31.17 11.24 89.12
NECEvent2014_8_4_scaffold_3119 178_004_scaffold_3119
Species: Clostridium perfringens (100%)
2 2013 bp 27.72 5.51 89.12
NECEvent2014_8_4_scaffold_3098 178_004_scaffold_3098
Species: Clostridium perfringens (100%)
2 2021 bp 29.64 6.61 89.21
NECEvent2014_8_4_scaffold_1201 178_004_scaffold_1201
Species: Clostridium perfringens (100%)
3 5370 bp 30.20 8.10 89.22
NECEvent2014_8_4_scaffold_3546 178_004_scaffold_3546
Species: Clostridium perfringens (100%)
1 1755 bp 31.28 7.35 89.23
NECEvent2014_8_4_scaffold_4144 178_004_scaffold_4144
Species: Clostridium perfringens (100%)
1 1472 bp 30.23 6.32 89.27
NECEvent2014_8_4_scaffold_3676 178_004_scaffold_3676
Species: Clostridium perfringens (100%)
3 1690 bp 30.06 8.52 89.29
NECEvent2014_8_4_scaffold_4439 178_004_scaffold_4439
Species: Clostridium perfringens (100%)
2 1354 bp 31.09 8.97 89.29
NECEvent2014_8_4_scaffold_4967 178_004_scaffold_4967
Species: Clostridium perfringens (100%)
1 1189 bp 25.23 5.30 89.32
NECEvent2014_8_4_scaffold_4569 178_004_scaffold_4569
Species: Finegoldia magna (50%)
2 1306 bp 32.16 5.05 89.36
NECEvent2014_8_4_scaffold_3642 178_004_scaffold_3642
Species: Clostridium perfringens (100%)
2 1708 bp 27.58 6.32 89.40
NECEvent2014_8_4_scaffold_3453 178_004_scaffold_3453
Species: Clostridium perfringens (100%)
2 1801 bp 31.87 10.66 89.45
NECEvent2014_8_4_scaffold_1376 178_004_scaffold_1376
Species: Clostridium perfringens (100%)
5 4568 bp 31.59 10.97 89.51
NECEvent2014_8_4_scaffold_2360 178_004_scaffold_2360
Species: Clostridium perfringens (100%)
4 2788 bp 29.27 7.48 89.53
NECEvent2014_8_4_scaffold_3650 178_004_scaffold_3650
Species: Clostridium perfringens (100%)
2 1702 bp 28.08 4.23 89.54
NECEvent2014_8_4_scaffold_997 178_004_scaffold_997
Species: Clostridium perfringens (100%)
8 6563 bp 30.34 7.95 89.55
NECEvent2014_8_4_scaffold_3311 178_004_scaffold_3311
Species: Clostridium perfringens (100%)
3 1886 bp 28.63 5.65 89.55
NECEvent2014_8_4_scaffold_1222 178_004_scaffold_1222
Species: Clostridium perfringens (100%)
2 5257 bp 33.76 14.38 89.65
NECEvent2014_8_4_scaffold_1417 178_004_scaffold_1417
Species: Clostridium perfringens (83.33%)
6 4440 bp 32.84 10.14 89.66
NECEvent2014_8_4_scaffold_2211 178_004_scaffold_2211
Species: Clostridium perfringens (100%)
5 2960 bp 32.84 11.15 89.70
NECEvent2014_8_4_scaffold_4899 178_004_scaffold_4899
Species: Clostridium perfringens (50%)
2 1207 bp 30.24 5.22 89.73
NECEvent2014_8_4_scaffold_5424 178_004_scaffold_5424
Species: Clostridium perfringens (100%)
1 1066 bp 34.15 12.10 89.77
NECEvent2014_8_4_scaffold_2132 178_004_scaffold_2132
Species: Clostridium perfringens (100%)
5 3070 bp 31.92 10.75 89.80
NECEvent2014_8_4_scaffold_3639 178_004_scaffold_3639
Species: Clostridium perfringens (50%)
2 1710 bp 29.42 6.32 89.82
NECEvent2014_8_4_scaffold_2007 178_004_scaffold_2007
Species: Clostridium perfringens (100%)
3 3232 bp 30.45 11.88 89.85
NECEvent2014_8_4_scaffold_3061 178_004_scaffold_3061
Species: Clostridium perfringens (100%)
3 2060 bp 27.67 5.68 89.85
NECEvent2014_8_4_scaffold_1774 178_004_scaffold_1774
Species: Clostridium perfringens (100%)
4 3621 bp 30.60 10.40 89.89
NECEvent2014_8_4_scaffold_4256 178_004_scaffold_4256
Species: Clostridium perfringens (100%)
1 1425 bp 29.61 6.74 89.89
NECEvent2014_8_4_scaffold_4845 178_004_scaffold_4845
Species: Clostridium perfringens (100%)
2 1223 bp 23.79 5.52 90.02
NECEvent2014_8_4_scaffold_2897 178_004_scaffold_2897
Species: Clostridium perfringens (100%)
3 2209 bp 28.38 4.41 90.04
NECEvent2014_8_4_scaffold_3534 178_004_scaffold_3534
Species: Clostridium perfringens (100%)
2 1758 bp 31.06 8.36 90.10
NECEvent2014_8_4_scaffold_5651 178_004_scaffold_5651
Species: Clostridium perfringens (100%)
1 1015 bp 29.26 5.91 90.15
NECEvent2014_8_4_scaffold_816 178_004_scaffold_816
Species: Clostridium perfringens (100%)
6 7990 bp 30.63 11.11 90.15
NECEvent2014_8_4_scaffold_5196 178_004_scaffold_5196
Species: Clostridium perfringens (100%)
1 1124 bp 29.80 6.01 90.21
NECEvent2014_8_4_scaffold_4207 178_004_scaffold_4207
Species: Clostridium perfringens (100%)
2 1443 bp 25.23 5.41 90.23
NECEvent2014_8_4_scaffold_4498 178_004_scaffold_4498
Species: Clostridium perfringens (100%)
2 1333 bp 25.28 7.88 90.25
NECEvent2014_8_4_scaffold_5497 178_004_scaffold_5497
Species: Clostridium perfringens (100%)
1 1050 bp 34.76 18.57 90.29
NECEvent2014_8_4_scaffold_5277 178_004_scaffold_5277
Species: Clostridium perfringens (100%)
1 1103 bp 28.47 5.71 90.30
NECEvent2014_8_4_scaffold_2469 178_004_scaffold_2469
Species: Clostridium perfringens (66.67%)
3 2660 bp 30.90 13.76 90.34
NECEvent2014_8_4_scaffold_4509 178_004_scaffold_4509
Species: Clostridium perfringens (100%)
2 1328 bp 25.75 7.91 90.36
NECEvent2014_8_4_scaffold_2478 178_004_scaffold_2478
Species: Clostridium perfringens (100%)
3 2649 bp 29.29 6.00 90.37
NECEvent2014_8_4_scaffold_2986 178_004_scaffold_2986
Species: Clostridium perfringens (100%)
2 2124 bp 28.95 7.49 90.40
NECEvent2014_8_4_scaffold_5013 178_004_scaffold_5013
Species: Clostridium perfringens (50%)
2 1179 bp 32.40 7.63 90.42
NECEvent2014_8_4_scaffold_3340 178_004_scaffold_3340
Species: Clostridium perfringens (50%)
2 1871 bp 28.43 6.25 90.43
NECEvent2014_8_4_scaffold_2109 178_004_scaffold_2109
Species: Clostridium perfringens (100%)
3 3094 bp 31.42 12.27 90.47
NECEvent2014_8_4_scaffold_1793 178_004_scaffold_1793
Species: Clostridium perfringens (100%)
3 3588 bp 30.32 9.62 90.47
NECEvent2014_8_4_scaffold_2806 178_004_scaffold_2806
Species: Clostridium perfringens (100%)
3 2307 bp 30.56 10.14 90.51
NECEvent2014_8_4_scaffold_5430 178_004_scaffold_5430
Species: Clostridium perfringens (100%)
2 1064 bp 30.64 6.34 90.51
NECEvent2014_8_4_scaffold_1646 178_004_scaffold_1646
Species: Clostridium perfringens (100%)
5 3878 bp 29.32 6.61 90.51
NECEvent2014_8_4_scaffold_4875 178_004_scaffold_4875
Species: Clostridium perfringens (100%)
1 1215 bp 34.49 13.58 90.62
Displaying items 301-350 of 810 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.