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NECEvent2014_8_4_Clostridium_perfringens_30_8

NECEvent2014_8_4_Clostridium_perfringens_30_11
In projects: NECEvent2014_8_4

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 351-400 of 810 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_4001 178_004_scaffold_4001
Species: Clostridium perfringens (100%)
2 1536 bp 29.75 7.81 90.63
NECEvent2014_8_4_scaffold_4644 178_004_scaffold_4644
Species: Clostridium perfringens (100%)
2 1284 bp 28.82 4.44 90.65
NECEvent2014_8_4_scaffold_2011 178_004_scaffold_2011
Species: Clostridium perfringens (100%)
2 3223 bp 30.16 11.82 90.66
NECEvent2014_8_4_scaffold_1501 178_004_scaffold_1501
Species: Clostridium perfringens (100%)
6 4219 bp 32.54 11.52 90.66
NECEvent2014_8_4_scaffold_5177 178_004_scaffold_5177
Species: Clostridium perfringens (100%)
1 1128 bp 30.85 6.38 90.69
NECEvent2014_8_4_scaffold_3995 178_004_scaffold_3995
Species: Clostridium perfringens (100%)
1 1538 bp 30.62 10.73 90.70
NECEvent2014_8_4_scaffold_2770 178_004_scaffold_2770
Species: Clostridium perfringens (100%)
3 2335 bp 31.39 8.35 90.71
NECEvent2014_8_4_scaffold_2281 178_004_scaffold_2281
Species: Clostridium perfringens (100%)
3 2879 bp 30.60 9.01 90.76
NECEvent2014_8_4_scaffold_1888 178_004_scaffold_1888
Species: Clostridium perfringens (100%)
2 3431 bp 30.60 13.38 90.76
NECEvent2014_8_4_scaffold_1660 178_004_scaffold_1660
Species: Clostridium perfringens (100%)
5 3843 bp 30.18 10.23 90.79
NECEvent2014_8_4_scaffold_3313 178_004_scaffold_3313
Species: Clostridium perfringens (100%)
2 1886 bp 26.78 5.73 90.83
NECEvent2014_8_4_scaffold_4752 178_004_scaffold_4752
Species: Clostridium perfringens (100%)
2 1254 bp 28.39 4.78 90.91
NECEvent2014_8_4_scaffold_1992 178_004_scaffold_1992
Species: Clostridium perfringens (100%)
1 3257 bp 31.16 7.92 90.91
NECEvent2014_8_4_scaffold_2713 178_004_scaffold_2713
Species: Clostridium perfringens (75%)
4 2402 bp 30.60 7.99 90.92
NECEvent2014_8_4_scaffold_2422 178_004_scaffold_2422
Species: Clostridium perfringens (100%)
2 2722 bp 29.32 8.60 91.04
NECEvent2014_8_4_scaffold_3982 178_004_scaffold_3982
Species: Clostridium perfringens (100%)
1 1542 bp 35.67 20.04 91.05
NECEvent2014_8_4_scaffold_4981 178_004_scaffold_4981
Species: Clostridium perfringens (100%)
3 1186 bp 26.48 7.34 91.06
NECEvent2014_8_4_scaffold_5607 178_004_scaffold_5607
Species: Clostridium perfringens (100%)
2 1027 bp 26.48 3.21 91.14
NECEvent2014_8_4_scaffold_1401 178_004_scaffold_1401
Species: Clostridium perfringens (100%)
5 4506 bp 31.34 7.92 91.15
NECEvent2014_8_4_scaffold_2964 178_004_scaffold_2964
Species: Clostridium perfringens (100%)
2 2142 bp 29.93 9.24 91.18
NECEvent2014_8_4_scaffold_1177 178_004_scaffold_1177
Species: Clostridium perfringens (100%)
6 5455 bp 35.51 21.39 91.18
NECEvent2014_8_4_scaffold_3220 178_004_scaffold_3220
Species: Clostridium perfringens (100%)
3 1951 bp 31.47 8.46 91.18
NECEvent2014_8_4_scaffold_4478 178_004_scaffold_4478
Species: Clostridium perfringens (100%)
1 1339 bp 32.41 13.44 91.19
NECEvent2014_8_4_scaffold_4734 178_004_scaffold_4734
Species: Clostridium perfringens (100%)
2 1260 bp 29.29 8.33 91.19
NECEvent2014_8_4_scaffold_1266 178_004_scaffold_1266
Species: Clostridium perfringens (100%)
5 4994 bp 32.50 17.48 91.31
NECEvent2014_8_4_scaffold_2977 178_004_scaffold_2977
Species: Clostridium perfringens (100%)
1 2129 bp 32.60 16.91 91.31
NECEvent2014_8_4_scaffold_1814 178_004_scaffold_1814
Species: Clostridium perfringens (100%)
4 3558 bp 30.41 10.16 91.40
NECEvent2014_8_4_scaffold_1526 178_004_scaffold_1526
Species: Clostridium perfringens (100%)
3 4145 bp 30.45 11.72 91.41
NECEvent2014_8_4_scaffold_1907 178_004_scaffold_1907
Species: Clostridium perfringens (100%)
3 3396 bp 30.30 8.57 91.43
NECEvent2014_8_4_scaffold_3818 178_004_scaffold_3818
Species: Clostridium perfringens (100%)
2 1617 bp 27.71 4.92 91.47
NECEvent2014_8_4_scaffold_5315 178_004_scaffold_5315
Species: Clostridium perfringens (100%)
2 1092 bp 30.95 6.73 91.48
NECEvent2014_8_4_scaffold_3485 178_004_scaffold_3485
Species: Clostridium perfringens (100%)
2 1779 bp 32.55 11.89 91.57
NECEvent2014_8_4_scaffold_3834 178_004_scaffold_3834
Species: Clostridium perfringens (100%)
1 1611 bp 32.84 12.29 91.62
NECEvent2014_8_4_scaffold_343 178_004_scaffold_343
Species: Clostridium perfringens (100%)
32 16028 bp 34.71 19.48 91.62
NECEvent2014_8_4_scaffold_5106 178_004_scaffold_5106
Species: Clostridium perfringens (100%)
1 1149 bp 29.68 8.09 91.64
NECEvent2014_8_4_scaffold_2384 178_004_scaffold_2384
Species: Clostridium perfringens (100%)
1 2753 bp 31.06 11.01 91.65
NECEvent2014_8_4_scaffold_3103 178_004_scaffold_3103
Species: Clostridium perfringens (50%)
4 2019 bp 29.62 4.09 91.68
NECEvent2014_8_4_scaffold_2087 178_004_scaffold_2087
Species: Clostridium perfringens (100%)
2 3125 bp 30.78 11.33 91.68
NECEvent2014_8_4_scaffold_1022 178_004_scaffold_1022
Species: Clostridium perfringens (100%)
7 6387 bp 31.56 10.45 91.69
NECEvent2014_8_4_scaffold_4226 178_004_scaffold_4226
Species: Clostridium perfringens (50%)
2 1437 bp 30.06 6.26 91.86
NECEvent2014_8_4_scaffold_3078 178_004_scaffold_3078
Species: Clostridium perfringens (100%)
2 2041 bp 30.38 8.38 91.87
NECEvent2014_8_4_scaffold_5512 178_004_scaffold_5512
Species: Clostridium perfringens (100%)
1 1048 bp 30.63 8.87 91.89
NECEvent2014_8_4_scaffold_1824 178_004_scaffold_1824
Species: Clostridium perfringens (100%)
5 3551 bp 28.22 4.65 91.92
NECEvent2014_8_4_scaffold_3129 178_004_scaffold_3129
Species: Clostridium perfringens (100%)
3 2007 bp 30.04 7.92 91.93
NECEvent2014_8_4_scaffold_2015 178_004_scaffold_2015
Species: Clostridium perfringens (100%)
4 3216 bp 32.40 10.63 91.98
NECEvent2014_8_4_scaffold_4941 178_004_scaffold_4941
Species: Clostridium perfringens (100%)
1 1197 bp 31.50 9.40 91.98
NECEvent2014_8_4_scaffold_1185 178_004_scaffold_1185
Species: Clostridium perfringens (100%)
4 5433 bp 31.38 12.53 91.99
NECEvent2014_8_4_scaffold_2297 178_004_scaffold_2297
Species: Clostridium perfringens (100%)
2 2859 bp 30.19 8.39 92.03
NECEvent2014_8_4_scaffold_2718 178_004_scaffold_2718
Species: Clostridium perfringens (100%)
2 2396 bp 31.55 11.39 92.03
NECEvent2014_8_4_scaffold_2667 178_004_scaffold_2667
Species: Clostridium perfringens (75%)
4 2451 bp 30.80 7.83 92.04
Displaying items 351-400 of 810 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.