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NECEvent2014_8_4_scaffold_2

Alias: 178_004_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_4_scaffold_2_1
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..756)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M0V3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF59195.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetoni
NECEvent2014_8_4_scaffold_2_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

933..1109
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGZ3_9CLOT
NECEvent2014_8_4_scaffold_2_3
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1122..1385
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HRR4_9CLOT
Coat F domain protein {ECO:0000313|EMBL:KJJ66078.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
coat F domain protein
NECEvent2014_8_4_scaffold_2_4
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1459..3216)
DNA (1758bp) protein (586aa)
Putative Helicase domain-containing protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EXY0_9CLOT rbh
Putative Helicase domain-containing protein {ECO:0000313|EMBL:CDG01116.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ch
helicase domain-containing protein
NECEvent2014_8_4_scaffold_2_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3406..5655)
DNA (2250bp) protein (750aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHW2_9CLOT rbh
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EEG28934.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] met
metallophosphoesterase
NECEvent2014_8_4_scaffold_2_6
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5976..8330
DNA (2355bp) protein (785aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EXX2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ88158.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
NECEvent2014_8_4_scaffold_2_7
unknown

Not on your lists

comp(8358..8696)
DNA (339bp) protein (113aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_2_8
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8790..9386)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7MC62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI97737.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
putative MobA-like protein
NECEvent2014_8_4_scaffold_2_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9380..10081)
DNA (702bp) protein (234aa)
Putative iron ABC transporter, ATP-binding protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V0E6_CLOBA rbh
putative iron ABC transporter ATP-binding protein
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIL08859.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinu
NECEvent2014_8_4_scaffold_2_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10162..11148)
DNA (987bp) protein (329aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V0E5_CLOBA rbh
iron chelate uptake ABC transporter permease
ABC 3 transport family protein {ECO:0000313|EMBL:AIY79058.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.
NECEvent2014_8_4_scaffold_2_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11139..12170)
DNA (1032bp) protein (344aa)
Putative iron chelate uptake ABC transporter, solute-binding protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UR47_CLOBO rbh
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIL08857.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bo
iron ABC transporter substrate-binding protein
NECEvent2014_8_4_scaffold_2_12
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12131..12718)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UR56_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:KEI11081.1}; TaxID=1443122 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi B str. NCTC 9691
hypothetical protein
NECEvent2014_8_4_scaffold_2_13
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12764..13147)
DNA (384bp) protein (128aa)
Putative endoribonuclease L-PSP n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q5Q0_9CLOT
yabJ; rutC family protein yabJ
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EKY23226.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 178
NECEvent2014_8_4_scaffold_2_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13173..15731)
DNA (2559bp) protein (853aa)
Selenium-dependent molybdenum hydroxylase 1 n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V0D8_CLOBA rbh
selenium-dependent molybdenum hydroxylase 1
Aldehyde oxidoreductase {ECO:0000313|EMBL:KIL08851.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_8_4_scaffold_2_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15718..17130)
DNA (1413bp) protein (471aa)
Dihydropyrimidinase {ECO:0000313|EMBL:EQE59655.1}; EC=3.5.2.2 {ECO:0000313|EMBL:EQE59655.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase n=1 Tax=Clostridium difficile CD45 RepID=T2Y390_CLODI rbh
NECEvent2014_8_4_scaffold_2_16
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17144..18232)
DNA (1089bp) protein (363aa)
diguanylate cyclase n=1 Tax=Clostridium botulinum RepID=UPI0002D587CD rbh
dihydroorotate dehydrogenase family protein
Diguanylate cyclase {ECO:0000313|EMBL:KIL08846.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_8_4_scaffold_2_17
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18250..19617)
DNA (1368bp) protein (456aa)
Xanthine permease n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7T7Z0_CLOSG rbh
Xanthine/uracil permease family protein {ECO:0000313|EMBL:KAJ52946.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetano
xanthine permease
NECEvent2014_8_4_scaffold_2_18
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19639..20964)
DNA (1326bp) protein (442aa)
Chlorohydrolase/aminohydrolase n=1 Tax=Clostridium intestinale URNW RepID=U2PZ02_9CLOT rbh
Chlorohydrolase/aminohydrolase {ECO:0000313|EMBL:ERK29009.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URN
chlorohydrolase/aminohydrolase
NECEvent2014_8_4_scaffold_2_19
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20981..22564)
DNA (1584bp) protein (528aa)
putative D-aminoacylase (EC:3.5.1.81)
D-aminoacylase n=1 Tax=Clostridium intestinale URNW RepID=U2PZE3_9CLOT rbh
D-aminoacylase {ECO:0000313|EMBL:ERK29144.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
NECEvent2014_8_4_scaffold_2_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22581..23768)
DNA (1188bp) protein (396aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U2D4_9CLOT rbh
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EKQ55056.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
putative peptidase, M20 family
NECEvent2014_8_4_scaffold_2_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23788..24993)
DNA (1206bp) protein (402aa)
dpaL; diaminopropionate ammonia-lyase (EC:4.3.1.15)
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:AIY79212.1}; EC=4.3.1.15 {ECO:0000313|EMBL:AIY79212.1};; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clost
Diaminopropionate ammonia-lyase n=2 Tax=Clostridium botulinum B RepID=B2TKM5_CLOBB rbh
NECEvent2014_8_4_scaffold_2_22
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25211..27001)
DNA (1791bp) protein (597aa)
Transcriptional regulator (PAS, AAA-type ATPase, and DNA-binding domain containing protein) n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U3G1_9CLOT rbh
Transcriptional regulator (PAS, AAA-type ATPase, and DNA-binding domain containing protein) {ECO:0000313|EMBL:EKQ55052.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clost
sigma-54-dependent transcriptional regulator YgeV
NECEvent2014_8_4_scaffold_2_23
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27256..27909)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FPR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02739.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
NECEvent2014_8_4_scaffold_2_24
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28072..28725
DNA (654bp) protein (218aa)
Nitroreductase family protein n=2 Tax=Turicibacter RepID=D4W6M2_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EFF63414.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter
nitroreductase
NECEvent2014_8_4_scaffold_2_25
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28900..30198)
DNA (1299bp) protein (433aa)
PTS system, lactose/cellobiose IIC component family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VLC8_CLOBI rbh
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
PTS system, cellobiose-specific IIC component
NECEvent2014_8_4_scaffold_2_26
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30225..30839)
DNA (615bp) protein (205aa)
MgsA AAA+ ATPase family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VSQ5_CLOBI rbh
MgsA AAA+ ATPase family protein {ECO:0000313|EMBL:EQK44518.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium]
Hypothetical protein
NECEvent2014_8_4_scaffold_2_27
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30914..31606
DNA (693bp) protein (231aa)
Helix-turn-helix domain, rpiR family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0D1M0_CLOSO
SIS domain-containing protein,MurPQ operon repressor,DNA-binding transcriptional repressor RpiR,Predicted phosphosugar isomerases,6-phospho 3-hexuloisomerase,Helix-turn-helix domain, rpiR family {ECO:
transcriptional regulator
NECEvent2014_8_4_scaffold_2_28
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(31807..33597)
DNA (1791bp) protein (597aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FAF5_9CLOT rbh
Putative Aspartate--tRNA ligase {ECO:0000313|EMBL:CDG02023.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF433
NECEvent2014_8_4_scaffold_2_29
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(33616..34866)
DNA (1251bp) protein (417aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
hisS; histidine--tRNA ligase HisS (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FN38_9CLOT rbh
NECEvent2014_8_4_scaffold_2_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34878..36308)
DNA (1431bp) protein (477aa)
hemZ; coproporphyrinogen dehydrogenase HemZ (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:AIY82671.1}; EC=1.3.99.22 {ECO:0000313|EMBL:AIY82671.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2H9_9CLOT rbh
Displaying items 1-30 of 118 in total

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