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NECEvent2014_8_4_scaffold_5

Alias: 178_004_scaffold_5

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_4_scaffold_5_1
unknown

Not on your lists

3..1364
DNA (1362bp) protein (454aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_5_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1768..2604
DNA (837bp) protein (279aa)
PHP domain protein {ECO:0000313|EMBL:ACD23406.1}; EC=3.1.3.- {ECO:0000313|EMBL:ACD23406.1};; Uncharacterized protein {ECO:0000313|EMBL:CDH91748.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostrid
PHP domain protein n=2 Tax=Clostridium botulinum B RepID=B2TP73_CLOBB
metal-dependent phosphoesterase
NECEvent2014_8_4_scaffold_5_3
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3024..4412
DNA (1389bp) protein (463aa)
Aspartate 4-decarboxylase {ECO:0000313|EMBL:EFF63463.1}; EC=4.1.1.12 {ECO:0000313|EMBL:EFF63463.1};; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichace
aspartate aminotransferase n=1 Tax=Bacillus sp. AP8 RepID=UPI0003050CB3 rbh
aspartate 4-decarboxylase
NECEvent2014_8_4_scaffold_5_4
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4572..4817)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2N388_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK29962.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
bacteriophage holin family protein
NECEvent2014_8_4_scaffold_5_5
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4889..5626)
DNA (738bp) protein (246aa)
ATPase components of various ABC-type transport systems contain duplicated ATPase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MP28_9FIRM
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ETT53986.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
NECEvent2014_8_4_scaffold_5_6
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5605..7254)
DNA (1650bp) protein (550aa)
UPI0003D60E7E related cluster n=1 Tax=unknown RepID=UPI0003D60E7E rbh
ABC transporter related protein {ECO:0000313|EMBL:ETI92504.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter
cbiO5; cobalt ABC transport system ATP-binding protein CbiO5
NECEvent2014_8_4_scaffold_5_7
Paenibacillus odorifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7236..8114)
DNA (879bp) protein (293aa)
Cobalt transport protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XZP1_9CLOT rbh
cobalt transporter
Cobalt transporter {ECO:0000313|EMBL:AIQ72473.1}; TaxID=189426 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus odorifer.;"
NECEvent2014_8_4_scaffold_5_8
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8136..8852)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6LPP3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB76067.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
NECEvent2014_8_4_scaffold_5_9
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8856..10382)
DNA (1527bp) protein (509aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI0003657713
Uncharacterized protein {ECO:0000313|EMBL:CDF12524.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium
hypothetical protein
NECEvent2014_8_4_scaffold_5_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10804..12189)
DNA (1386bp) protein (462aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
M18 family aminopeptidase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UWW8_CLOBA
putative M18 family aminopeptidase 1
NECEvent2014_8_4_scaffold_5_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12270..13181)
DNA (912bp) protein (304aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SA
HPr kinase/phosphorylase n=1 Tax=Clostridium colicanis 209318 RepID=N9XUH2_9CLOT
hprK; HPr(Ser) kinase/phosphatase
NECEvent2014_8_4_scaffold_5_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13195..13383)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI00035E17D3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL07653.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_8_4_scaffold_5_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14218..14613)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WKF4_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84159.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.
NECEvent2014_8_4_scaffold_5_14
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14632..14874)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C9A7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR25944.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
NECEvent2014_8_4_scaffold_5_15
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15014..16189)
DNA (1176bp) protein (392aa)
Metallo-beta-lactamase family protein/flavodoxin n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CC84_9CLOT rbh
Metallo-beta-lactamase family protein/flavodoxin {ECO:0000313|EMBL:EOR24821.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridi
metallo-beta-lactamase/flavodoxin
NECEvent2014_8_4_scaffold_5_16
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16297..18579)
DNA (2283bp) protein (761aa)
helD1; helicase IV (EC:3.6.4.12)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
Helicase IV n=2 Tax=Clostridium saccharoperbutylacetonicum RepID=M1MRH8_9CLOT rbh
NECEvent2014_8_4_scaffold_5_17
unknown

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comp(18672..18800)
DNA (129bp) protein (43aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_5_18
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18906..19502)
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium ultunense Esp RepID=M1ZEE5_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCQ96649.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunen
TetR family transcriptional regulator
NECEvent2014_8_4_scaffold_5_19
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19612..20472
DNA (861bp) protein (287aa)
EDD domain protein, DegV family n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C402_9CLOT rbh
EDD domain protein, DegV family {ECO:0000313|EMBL:EEG73160.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
EDD domain protein, DegV family
NECEvent2014_8_4_scaffold_5_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20541..21074)
DNA (534bp) protein (178aa)
Putative membrane protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UPQ1_CLOBO
Putative membrane protein {ECO:0000313|EMBL:EES51034.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'Bo
hypothetical protein
NECEvent2014_8_4_scaffold_5_21
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21251..21868
DNA (618bp) protein (206aa)
ADP-ribose pyrophosphatase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MUE8_9CLOT
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:AGF58291.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacet
NECEvent2014_8_4_scaffold_5_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21929..24364)
DNA (2436bp) protein (812aa)
homocysteine methyltransferase n=1 Tax=Clostridium botulinum RepID=UPI0002D9B431 rbh
B12 binding domain protein {ECO:0000313|EMBL:AIY80201.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
5-methyltetrahydrofolate--homocysteine methyltransferase
NECEvent2014_8_4_scaffold_5_23
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24318..25007)
DNA (690bp) protein (230aa)
Vitamin B12 dependent methionine synthase, activation region n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MTD8_CLOSA
vitamin B12 dependent methionine synthase, activation region
Vitamin B12 dependent methionine synthase, activation region {ECO:0000313|EMBL:AGX44039.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
NECEvent2014_8_4_scaffold_5_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24997..25452)
DNA (456bp) protein (152aa)
luxS; S-ribosylhomocysteinase (EC:4.4.1.21)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO
S-ribosylhomocysteine lyase n=2 Tax=Clostridium botulinum B RepID=B2TP85_CLOBB
NECEvent2014_8_4_scaffold_5_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25466..26353)
DNA (888bp) protein (296aa)
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
Methylenetetrahydrofolate reductase n=2 Tax=Clostridium botulinum B RepID=B2TP86_CLOBB rbh
NECEvent2014_8_4_scaffold_5_26
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26611..27339)
DNA (729bp) protein (243aa)
ssuB2; aliphatic sulfonates import ATP-binding protein SsuB (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H864_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH98700.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NECEvent2014_8_4_scaffold_5_27
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27320..28324)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH92_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH98701.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic component
NECEvent2014_8_4_scaffold_5_28
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28326..29102)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFQ4_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH98702.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ABC transporter permease protein
NECEvent2014_8_4_scaffold_5_29
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29372..30109)
DNA (738bp) protein (246aa)
TatD family hydrolase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H866_9CLOT rbh
TatD family hydrolase {ECO:0000313|EMBL:EEH98705.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ycfH; hydrolase of PHP superfamily
NECEvent2014_8_4_scaffold_5_30
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30328..31302)
DNA (975bp) protein (325aa)
UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CF19_9CLOT rbh
UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase {ECO:0000313|EMBL:EOR27640.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridi
tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase
Displaying items 1-30 of 107 in total

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