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NECEvent2014_8_4_scaffold_348

Alias: 178_004_scaffold_348

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_4_scaffold_348_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..879)
DNA (879bp) protein (293aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA n=4 Tax=Clostridium butyricum RepID=B1QT23_CLOBU
Flavodoxin oxidoreductase {ECO:0000313|EMBL:KJZ84934.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
glucose-inhibited division protein A
NECEvent2014_8_4_scaffold_348_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(876..1865)
DNA (990bp) protein (330aa)
Electron transfer subunit protein n=2 Tax=Clostridium butyricum RepID=B1QT22_CLOBU rbh
Oxidoreductase family protein {ECO:0000313|EMBL:EEP53789.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str.
FAD-binding domain protein
NECEvent2014_8_4_scaffold_348_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2131..2325)
DNA (195bp) protein (65aa)
Transposase n=1 Tax=Clostridium botulinum RepID=R4NQU2_CLOBO
Transposase IS4 family protein {ECO:0000313|EMBL:AIY79551.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.
transposase, IS4
NECEvent2014_8_4_scaffold_348_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2509..5034
DNA (2526bp) protein (842aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RCX3_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT28385.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
Hypothetical protein
NECEvent2014_8_4_scaffold_348_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5048..8452
DNA (3405bp) protein (1135aa)
Helicase domain protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BQ95_CLOPF rbh
Helicase domain protein {ECO:0000313|EMBL:EDT16150.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
DNA helicase
NECEvent2014_8_4_scaffold_348_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8421..10451
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RCX1_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT28169.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
conserved hypothetical protein
NECEvent2014_8_4_scaffold_348_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10632..11849
DNA (1218bp) protein (406aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
putative type II modification methyltransferase (EC:2.1.1.37)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDC2_9CLOT rbh
NECEvent2014_8_4_scaffold_348_8
unknown

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11907..12155
DNA (249bp) protein (83aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_348_9

Not on your lists

comp(12310..12936)
DNA (627bp) protein (209aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z6P3_CLOBU
Sigma-70 region 2 protein {ECO:0000313|EMBL:ETJ20801.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
sigma-70 region 2 domain-containing protein
NECEvent2014_8_4_scaffold_348_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13172..13585
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ARH4_CLOBU
Cell wall hydrolase {ECO:0000313|EMBL:KHD13996.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
cell wall hydrolase/autolysin
NECEvent2014_8_4_scaffold_348_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13593..13748
DNA (156bp) protein (52aa)
Cell wall hydrolase {ECO:0000313|EMBL:KHD13996.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
NECEvent2014_8_4_scaffold_348_12
unknown

Not on your lists

13693..13806
DNA (114bp) protein (38aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_348_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14315..14947
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI000316BA9D
Uncharacterized protein {ECO:0000313|EMBL:AJG99801.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium
hypothetical protein
NECEvent2014_8_4_scaffold_348_14
Arcobacter sp. L, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

15324..15695
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Arcobacter sp. L RepID=G2HY38_9PROT
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK74041.1}; TaxID=944547 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arco
Displaying 14 items

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