ggKbase home page
Advanced Search
Search Help

NECEvent2014_8_4_Streptococcus_HSISS3-rel_41_5

NECEvent2014_8_4_Streptococcus_41_5
In projects: NECEvent2014_8_4

Consensus taxonomy: Streptococcus  →  Lactobacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_8_4_UNK

Properties

Avg. coverage: 5.20 Longest contig: 7.99 Kbp Bin length: 1.39 Mbp GC content: 40.63 %
Contigs count: 676 Features count: 1591 rRNAs count: 0 tRNAs count: 12

Genome completeness

near complete RP 43 / 55 MC: 2 BSCG 42 / 51 ASCG 10 / 38 MC: 3

Description

May include other low abundance Strep.

Displaying items 201-250 of 676 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_4924 178_004_scaffold_4924
Species: Streptococcus sp. HSISS3 (50%)
2 1202 bp 41.18 5.24 90.35
NECEvent2014_8_4_scaffold_2877 178_004_scaffold_2877
Species: Streptococcus sp. HSISS2 (50%)
2 2225 bp 41.93 5.80 78.88
NECEvent2014_8_4_scaffold_4414 178_004_scaffold_4414
Species: Streptococcus sp. HSISS2 (100%)
2 1365 bp 42.56 4.40 97.80
NECEvent2014_8_4_scaffold_3138 178_004_scaffold_3138
Species: Streptococcus sp. C150 (50%)
2 2001 bp 40.88 3.67 95.20
NECEvent2014_8_4_scaffold_5186 178_004_scaffold_5186
Species: Streptococcus sp. C150 (50%)
2 1126 bp 44.49 11.32 96.45
NECEvent2014_8_4_scaffold_2627 178_004_scaffold_2627
Species: Streptococcus sp. HSISS3 (50%)
2 2489 bp 40.82 5.85 97.51
NECEvent2014_8_4_scaffold_3395 178_004_scaffold_3395
Species: Streptococcus sp. HSISS2 (100%)
2 1834 bp 40.46 4.42 97.66
NECEvent2014_8_4_scaffold_3651 178_004_scaffold_3651
Species: Streptococcus sp. C150 (50%)
2 1702 bp 38.90 4.94 82.84
NECEvent2014_8_4_scaffold_3907 178_004_scaffold_3907
Species: Streptococcus sp. DORA_10 (50%)
2 1574 bp 42.44 4.38 80.24
NECEvent2014_8_4_scaffold_4419 178_004_scaffold_4419
Species: Streptococcus pneumoniae (50%)
2 1363 bp 41.16 6.27 78.80
NECEvent2014_8_4_scaffold_3396 178_004_scaffold_3396
Species: Streptococcus sp. HSISS3 (50%)
2 1833 bp 41.73 6.22 92.14
NECEvent2014_8_4_scaffold_4932 178_004_scaffold_4932
Species: Streptococcus pneumoniae (50%)
2 1199 bp 43.70 4.88 100.08
NECEvent2014_8_4_scaffold_4165 178_004_scaffold_4165
Species: Streptococcus salivarius (100%)
2 1464 bp 35.38 4.71 99.80
NECEvent2014_8_4_scaffold_1863 178_004_scaffold_1863
Species: Streptococcus sp. HSISS3 (50%)
2 3467 bp 40.96 6.40 96.83
NECEvent2014_8_4_scaffold_4679 178_004_scaffold_4679
Species: Streptococcus sp. HSISS1 (50%)
2 1273 bp 43.52 4.24 98.04
NECEvent2014_8_4_scaffold_3144 178_004_scaffold_3144
Species: Streptococcus mitis (100%)
2 1997 bp 39.31 4.58 97.05
NECEvent2014_8_4_scaffold_3145 178_004_scaffold_3145
Species: Streptococcus sp. HSISS3 (100%)
2 1997 bp 41.71 4.51 82.02
NECEvent2014_8_4_scaffold_4425 178_004_scaffold_4425
Species: Streptococcus peroris (50%)
2 1360 bp 40.22 4.41 99.93
NECEvent2014_8_4_scaffold_1866 178_004_scaffold_1866
Species: Streptococcus sp. HSISS1 (50%)
2 3462 bp 43.33 5.29 97.57
NECEvent2014_8_4_scaffold_3916 178_004_scaffold_3916
Species: Streptococcus salivarius (50%)
2 1571 bp 42.20 5.16 97.77
NECEvent2014_8_4_scaffold_4429 178_004_scaffold_4429
Species: Streptococcus sp. C150 (50%)
2 1359 bp 40.47 6.62 88.74
NECEvent2014_8_4_scaffold_3153 178_004_scaffold_3153
Species: Streptococcus mitis (50%)
2 1991 bp 37.17 6.18 90.11
NECEvent2014_8_4_scaffold_3665 178_004_scaffold_3665
Species: Streptococcus salivarius (50%)
2 1696 bp 41.27 4.95 97.11
NECEvent2014_8_4_scaffold_2898 178_004_scaffold_2898
Species: Streptococcus salivarius CAG:79 (50%)
2 2204 bp 36.89 4.36 87.93
NECEvent2014_8_4_scaffold_3668 178_004_scaffold_3668
Species: Streptococcus salivarius (50%)
2 1696 bp 31.07 6.01 87.74
NECEvent2014_8_4_scaffold_4436 178_004_scaffold_4436
Species: Streptococcus salivarius (50%)
2 1356 bp 40.49 3.10 81.86
NECEvent2014_8_4_scaffold_3158 178_004_scaffold_3158
Species: Streptococcus mitis (50%)
2 1985 bp 39.24 3.32 84.18
NECEvent2014_8_4_scaffold_4694 178_004_scaffold_4694
Species: Streptococcus sp. SK643 (50%)
2 1269 bp 39.95 6.15 95.04
NECEvent2014_8_4_scaffold_2903 178_004_scaffold_2903
Species: Streptococcus sp. HSISS2 (50%)
2 2202 bp 40.51 5.25 96.05
NECEvent2014_8_4_scaffold_4954 178_004_scaffold_4954
Species: Streptococcus thermophilus (50%)
2 1192 bp 33.81 9.06 99.16
NECEvent2014_8_4_scaffold_3419 178_004_scaffold_3419
Species: Streptococcus mitis (50%)
2 1824 bp 39.58 6.66 61.18
NECEvent2014_8_4_scaffold_4187 178_004_scaffold_4187
Species: Streptococcus mitis (100%)
2 1454 bp 43.12 3.61 91.61
NECEvent2014_8_4_scaffold_5469 178_004_scaffold_5469
Species: Streptococcus sp. HSISS1 (100%)
2 1056 bp 47.06 3.84 100.00
NECEvent2014_8_4_scaffold_4191 178_004_scaffold_4191
Species: Streptococcus mitis (50%)
2 1452 bp 43.32 4.13 99.17
NECEvent2014_8_4_scaffold_5215 178_004_scaffold_5215
Species: Streptococcus sp. HSISS2 (50%)
2 1119 bp 40.04 4.42 86.06
NECEvent2014_8_4_scaffold_5471 178_004_scaffold_5471
Species: Streptococcus sp. C150 (50%)
2 1056 bp 42.33 3.84 59.09
NECEvent2014_8_4_scaffold_2656 178_004_scaffold_2656
Species: Streptococcus mitis (50%)
2 2464 bp 39.81 4.87 99.47
NECEvent2014_8_4_scaffold_1634 178_004_scaffold_1634
Species: Streptococcus sp. HSISS3 (100%)
2 3894 bp 42.91 5.82 98.54
NECEvent2014_8_4_scaffold_4706 178_004_scaffold_4706
Species: Streptococcus sp. HSISS3 (50%)
2 1267 bp 41.04 4.74 99.68
NECEvent2014_8_4_scaffold_3175 178_004_scaffold_3175
Species: Streptococcus sp. HSISS3 (50%)
2 1975 bp 39.65 4.48 81.72
NECEvent2014_8_4_scaffold_2408 178_004_scaffold_2408
Species: Streptococcus salivarius (100%)
2 2733 bp 38.68 4.61 96.38
NECEvent2014_8_4_scaffold_3176 178_004_scaffold_3176
Species: Streptococcus mitis (50%)
2 1974 bp 40.43 4.10 87.99
NECEvent2014_8_4_scaffold_3688 178_004_scaffold_3688
Species: Streptococcus sp. M334 (50%)
2 1684 bp 36.94 3.92 88.84
NECEvent2014_8_4_scaffold_4200 178_004_scaffold_4200
Species: Streptococcus mitis (100%)
2 1447 bp 40.36 3.73 87.91
NECEvent2014_8_4_scaffold_4712 178_004_scaffold_4712
Species: Streptococcus sp. HSISS3 (50%)
2 1265 bp 44.03 5.22 96.52
NECEvent2014_8_4_scaffold_2921 178_004_scaffold_2921
Species: Streptococcus mitis (100%)
2 2187 bp 41.84 4.25 92.32
NECEvent2014_8_4_scaffold_1899 178_004_scaffold_1899
Species: Streptococcus sp. HSISS3 (50%)
2 3416 bp 41.74 4.57 91.07
NECEvent2014_8_4_scaffold_3691 178_004_scaffold_3691
Species: Streptococcus sp. HSISS3 (100%)
2 1684 bp 38.24 4.99 72.33
NECEvent2014_8_4_scaffold_4715 178_004_scaffold_4715
Species: Streptococcus sp. DORA_10 (50%)
2 1264 bp 42.80 4.51 93.04
NECEvent2014_8_4_scaffold_2413 178_004_scaffold_2413
Species: Streptococcus salivarius (100%)
2 2729 bp 39.43 4.07 81.02
Displaying items 201-250 of 676 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.