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NECEvent2014_8_4_Streptococcus_HSISS3-rel_41_5

NECEvent2014_8_4_Streptococcus_41_5
In projects: NECEvent2014_8_4

Consensus taxonomy: Streptococcus  →  Lactobacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_8_4_UNK

Properties

Avg. coverage: 5.20 Longest contig: 7.99 Kbp Bin length: 1.39 Mbp GC content: 40.63 %
Contigs count: 676 Features count: 1591 rRNAs count: 0 tRNAs count: 12

Genome completeness

near complete RP 43 / 55 MC: 2 BSCG 42 / 51 ASCG 10 / 38 MC: 3

Description

May include other low abundance Strep.

Displaying items 251-300 of 676 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_3181 178_004_scaffold_3181
Species: Streptococcus sp. HSISS3 (100%)
2 1972 bp 43.81 5.17 85.80
NECEvent2014_8_4_scaffold_4462 178_004_scaffold_4462
Species: Streptococcus sp. HSISS3 (100%)
2 1347 bp 41.57 4.34 87.53
NECEvent2014_8_4_scaffold_4974 178_004_scaffold_4974
Species: Streptococcus sp. HSISS2 (50%)
2 1187 bp 40.69 3.79 101.10
NECEvent2014_8_4_scaffold_5230 178_004_scaffold_5230
Species: Streptococcus sp. HSISS3 (50%)
2 1116 bp 36.38 2.96 95.70
NECEvent2014_8_4_scaffold_2672 178_004_scaffold_2672
Species: Streptococcus oralis (50%)
2 2443 bp 41.18 4.91 87.31
NECEvent2014_8_4_scaffold_1649 178_004_scaffold_1649
Species: Streptococcus sp. HSISS3 (100%)
2 3872 bp 38.38 4.96 81.43
NECEvent2014_8_4_scaffold_4210 178_004_scaffold_4210
Species: Streptococcus thermophilus (50%)
2 1443 bp 40.82 5.82 93.56
NECEvent2014_8_4_scaffold_4467 178_004_scaffold_4467
Species: Streptococcus mitis (100%)
2 1343 bp 38.42 4.13 82.87
NECEvent2014_8_4_scaffold_3188 178_004_scaffold_3188
Species: Streptococcus sp. HSISS3 (100%)
2 1968 bp 42.12 3.89 90.70
NECEvent2014_8_4_scaffold_4214 178_004_scaffold_4214
Species: Streptococcus sp. M334 (50%)
2 1441 bp 41.01 4.48 82.03
NECEvent2014_8_4_scaffold_3193 178_004_scaffold_3193
Species: Streptococcus sp. HSISS2 (50%)
2 1965 bp 39.75 4.96 94.96
NECEvent2014_8_4_scaffold_2171 178_004_scaffold_2171
Species: Streptococcus sp. SR4 (50%)
2 3012 bp 42.73 7.47 99.60
NECEvent2014_8_4_scaffold_5499 178_004_scaffold_5499
Species: Streptococcus sp. HSISS2 (50%)
2 1050 bp 39.90 5.00 95.71
NECEvent2014_8_4_scaffold_5500 178_004_scaffold_5500
Species: Streptococcus sp. SK643 (50%)
2 1050 bp 43.14 3.57 92.00
NECEvent2014_8_4_scaffold_4477 178_004_scaffold_4477
Species: Streptococcus sp. HSISS3 (50%)
2 1339 bp 40.78 3.14 91.41
NECEvent2014_8_4_scaffold_4733 178_004_scaffold_4733
Species: Streptococcus sp. C150 (50%)
2 1260 bp 43.65 4.76 95.71
NECEvent2014_8_4_scaffold_2686 178_004_scaffold_2686
Species: Streptococcus salivarius (100%)
2 2433 bp 38.55 4.62 96.79
NECEvent2014_8_4_scaffold_4222 178_004_scaffold_4222
Species: Streptococcus mitis (50%)
2 1438 bp 39.08 5.74 86.16
NECEvent2014_8_4_scaffold_2432 178_004_scaffold_2432
Species: Streptococcus sanguinis (50%)
2 2704 bp 35.32 3.88 99.30
NECEvent2014_8_4_scaffold_2433 178_004_scaffold_2433
Species: Streptococcus sp. HSISS3 (50%)
2 2703 bp 42.95 6.94 92.23
NECEvent2014_8_4_scaffold_2689 178_004_scaffold_2689
Species: Streptococcus mitis (100%)
2 2430 bp 40.78 4.14 77.04
NECEvent2014_8_4_scaffold_4482 178_004_scaffold_4482
Species: Streptococcus sp. HSISS3 (100%)
2 1337 bp 41.51 3.59 84.59
NECEvent2014_8_4_scaffold_1926 178_004_scaffold_1926
Species: Streptococcus sp. ACS2 (50%)
2 3379 bp 41.67 5.50 80.08
NECEvent2014_8_4_scaffold_2952 178_004_scaffold_2952
Species: Streptococcus sp. HSISS3 (100%)
2 2154 bp 40.44 4.25 95.54
NECEvent2014_8_4_scaffold_4489 178_004_scaffold_4489
Species: Streptococcus sp. DORA_10 (50%)
2 1336 bp 39.97 6.96 82.19
NECEvent2014_8_4_scaffold_4490 178_004_scaffold_4490
Species: Streptococcus sp. HSISS2 (50%)
2 1336 bp 40.72 7.86 94.09
NECEvent2014_8_4_scaffold_5258 178_004_scaffold_5258
Species: Streptococcus thermophilus (50%)
2 1109 bp 38.32 4.33 100.63
NECEvent2014_8_4_scaffold_5514 178_004_scaffold_5514
Species: Streptococcus mitis (100%)
2 1048 bp 42.18 3.58 84.73
NECEvent2014_8_4_scaffold_4492 178_004_scaffold_4492
Species: Streptococcus salivarius (50%)
2 1335 bp 39.40 3.37 91.24
NECEvent2014_8_4_scaffold_4748 178_004_scaffold_4748
Species: Streptococcus mitis (50%)
2 1255 bp 45.98 4.78 99.68
NECEvent2014_8_4_scaffold_5261 178_004_scaffold_5261
Species: Streptococcus sp. HSISS2 (50%)
2 1108 bp 42.24 4.06 91.25
NECEvent2014_8_4_scaffold_4494 178_004_scaffold_4494
Species: Streptococcus sp. HSISS2 (50%)
2 1334 bp 33.51 4.05 99.18
NECEvent2014_8_4_scaffold_4239 178_004_scaffold_4239
Species: Streptococcus mitis (100%)
2 1432 bp 42.46 4.40 86.73
NECEvent2014_8_4_scaffold_3728 178_004_scaffold_3728
Species: Streptococcus sp. C150 (50%)
2 1664 bp 38.82 8.11 88.88
NECEvent2014_8_4_scaffold_5265 178_004_scaffold_5265
Species: Streptococcus salivarius (100%)
2 1107 bp 41.10 5.69 84.01
NECEvent2014_8_4_scaffold_2706 178_004_scaffold_2706
Species: Streptococcus sp. C150 (50%)
2 2408 bp 42.77 5.61 97.55
NECEvent2014_8_4_scaffold_3474 178_004_scaffold_3474
Species: Streptococcus sp. C150 (50%)
2 1783 bp 37.30 4.71 80.59
NECEvent2014_8_4_scaffold_5522 178_004_scaffold_5522
Species: Streptococcus mitis (50%)
2 1044 bp 37.74 4.74 98.56
NECEvent2014_8_4_scaffold_2451 178_004_scaffold_2451
Species: Streptococcus sp. C150 (100%)
2 2682 bp 41.35 6.49 77.96
NECEvent2014_8_4_scaffold_3475 178_004_scaffold_3475
Species: Streptococcus sp. ACS2 (50%)
2 1783 bp 39.15 4.88 99.78
NECEvent2014_8_4_scaffold_5524 178_004_scaffold_5524
Species: Streptococcus mitis (50%)
2 1044 bp 39.85 4.89 95.69
NECEvent2014_8_4_scaffold_2965 178_004_scaffold_2965
Species: Streptococcus sp. HSISS2 (100%)
2 2142 bp 41.74 6.02 94.12
NECEvent2014_8_4_scaffold_3733 178_004_scaffold_3733
Species: Streptococcus sp. HSISS1 (50%)
2 1663 bp 42.03 4.60 94.71
NECEvent2014_8_4_scaffold_5526 178_004_scaffold_5526
Species: Streptococcus sp. HSISS3 (50%)
2 1044 bp 39.75 3.16 81.90
NECEvent2014_8_4_scaffold_4760 178_004_scaffold_4760
Species: Streptococcus salivarius (50%)
2 1251 bp 39.73 3.60 77.70
NECEvent2014_8_4_scaffold_3994 178_004_scaffold_3994
Species: Streptococcus mitis (50%)
2 1538 bp 41.22 4.29 100.65
NECEvent2014_8_4_scaffold_2971 178_004_scaffold_2971
Species: Streptococcus mitis (100%)
2 2135 bp 43.37 5.48 97.24
NECEvent2014_8_4_scaffold_4251 178_004_scaffold_4251
Species: Streptococcus sp. HSISS3 (50%)
2 1427 bp 39.17 6.52 90.40
NECEvent2014_8_4_scaffold_3740 178_004_scaffold_3740
Species: Streptococcus mitis (50%)
2 1661 bp 42.38 5.51 99.34
NECEvent2014_8_4_scaffold_5022 178_004_scaffold_5022
Species: Streptococcus sp. C150 (50%)
2 1175 bp 37.96 4.60 76.34
Displaying items 251-300 of 676 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.