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NECEvent2014_8_4_Streptococcus_HSISS3-rel_41_5

NECEvent2014_8_4_Streptococcus_41_5
In projects: NECEvent2014_8_4

Consensus taxonomy: Streptococcus  →  Lactobacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_8_4_UNK

Properties

Avg. coverage: 5.20 Longest contig: 7.99 Kbp Bin length: 1.39 Mbp GC content: 40.63 %
Contigs count: 676 Features count: 1591 rRNAs count: 0 tRNAs count: 12

Genome completeness

near complete RP 43 / 55 MC: 2 BSCG 42 / 51 ASCG 10 / 38 MC: 3

Description

May include other low abundance Strep.

Displaying items 351-400 of 676 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_3267 178_004_scaffold_3267
Species: Streptococcus sp. HSISS3 (50%)
2 1917 bp 41.84 5.63 100.00
NECEvent2014_8_4_scaffold_3523 178_004_scaffold_3523
Species: Streptococcus sp. BS29a (50%)
2 1761 bp 33.79 3.83 80.07
NECEvent2014_8_4_scaffold_3524 178_004_scaffold_3524
Species: Streptococcus salivarius (50%)
2 1761 bp 35.43 3.75 96.59
NECEvent2014_8_4_scaffold_4293 178_004_scaffold_4293
Species: Streptococcus sp. HSISS3 (50%)
2 1409 bp 39.67 5.11 89.43
NECEvent2014_8_4_scaffold_2758 178_004_scaffold_2758
Species: Streptococcus sp. HSISS3 (50%)
2 2348 bp 43.40 4.15 96.98
NECEvent2014_8_4_scaffold_4551 178_004_scaffold_4551
Species: Streptococcus sp. HSISS3 (50%)
2 1313 bp 40.21 4.11 87.28
NECEvent2014_8_4_scaffold_3784 178_004_scaffold_3784
Species: Streptococcus sp. HSISS1 (50%)
2 1634 bp 42.29 4.59 91.06
NECEvent2014_8_4_scaffold_4040 178_004_scaffold_4040
Species: Streptococcus sp. HSISS3 (100%)
2 1522 bp 40.47 4.83 66.62
NECEvent2014_8_4_scaffold_3786 178_004_scaffold_3786
Species: Streptococcus sp. HSISS3 (100%)
2 1632 bp 43.44 4.23 87.13
NECEvent2014_8_4_scaffold_3020 178_004_scaffold_3020
Species: Streptococcus sp. HSISS3 (100%)
2 2093 bp 40.71 4.01 85.71
NECEvent2014_8_4_scaffold_4812 178_004_scaffold_4812
Species: Streptococcus sp. HSISS3 (50%)
2 1235 bp 42.83 5.10 95.47
NECEvent2014_8_4_scaffold_5580 178_004_scaffold_5580
Species: Streptococcus mitis (50%)
2 1032 bp 43.31 3.34 79.36
NECEvent2014_8_4_scaffold_4045 178_004_scaffold_4045
Species: Streptococcus sp. HSISS3 (50%)
2 1521 bp 39.71 3.16 82.45
NECEvent2014_8_4_scaffold_3278 178_004_scaffold_3278
Species: Streptococcus sp. C150 (100%)
2 1912 bp 40.85 6.90 96.65
NECEvent2014_8_4_scaffold_3537 178_004_scaffold_3537
Species: Streptococcus sp. HSISS2 (50%)
2 1756 bp 38.84 5.13 97.89
NECEvent2014_8_4_scaffold_4561 178_004_scaffold_4561
Species: Streptococcus parasanguinis (50%)
2 1310 bp 35.27 3.32 58.17
NECEvent2014_8_4_scaffold_3538 178_004_scaffold_3538
Species: Streptococcus sp. HSISS3 (50%)
2 1756 bp 40.83 4.95 100.97
NECEvent2014_8_4_scaffold_5330 178_004_scaffold_5330
Species: Streptococcus oralis (100%)
2 1086 bp 42.08 4.83 99.72
NECEvent2014_8_4_scaffold_3286 178_004_scaffold_3286
Species: Streptococcus sp. HSISS3 (50%)
2 1904 bp 40.86 5.36 98.16
NECEvent2014_8_4_scaffold_3799 178_004_scaffold_3799
Species: Streptococcus pneumoniae (100%)
2 1625 bp 40.25 3.97 92.86
NECEvent2014_8_4_scaffold_5336 178_004_scaffold_5336
Species: Streptococcus sp. HSISS3 (50%)
2 1085 bp 42.21 3.87 98.99
NECEvent2014_8_4_scaffold_5592 178_004_scaffold_5592
Species: Streptococcus mitis (100%)
2 1030 bp 40.68 5.10 63.79
NECEvent2014_8_4_scaffold_2777 178_004_scaffold_2777
Species: Streptococcus sp. HSISS3 (50%)
2 2332 bp 41.77 4.57 84.52
NECEvent2014_8_4_scaffold_5081 178_004_scaffold_5081
Species: Streptococcus salivarius (50%)
2 1157 bp 37.86 4.67 93.86
NECEvent2014_8_4_scaffold_5593 178_004_scaffold_5593
Species: Streptococcus tigurinus (50%)
2 1030 bp 41.17 3.50 86.50
NECEvent2014_8_4_scaffold_3548 178_004_scaffold_3548
Species: Streptococcus sp. M334 (50%)
2 1753 bp 40.50 5.13 84.71
NECEvent2014_8_4_scaffold_4572 178_004_scaffold_4572
Species: Streptococcus thermophilus (50%)
2 1305 bp 40.23 6.78 46.44
NECEvent2014_8_4_scaffold_1757 178_004_scaffold_1757
Species: Streptococcus sp. ACS2 (50%)
2 3654 bp 43.71 7.06 97.13
NECEvent2014_8_4_scaffold_2269 178_004_scaffold_2269
Species: Streptococcus mitis (50%)
2 2889 bp 40.95 4.05 89.51
NECEvent2014_8_4_scaffold_2781 178_004_scaffold_2781
Species: Streptococcus mitis (50%)
2 2327 bp 42.67 5.03 96.05
NECEvent2014_8_4_scaffold_4573 178_004_scaffold_4573
Species: Streptococcus mitis (100%)
2 1305 bp 41.15 5.29 85.29
NECEvent2014_8_4_scaffold_3550 178_004_scaffold_3550
Species: Streptococcus salivarius (50%)
2 1753 bp 38.11 4.71 74.44
NECEvent2014_8_4_scaffold_2784 178_004_scaffold_2784
Species: Streptococcus sp. BS35b (50%)
2 2326 bp 39.29 3.22 94.67
NECEvent2014_8_4_scaffold_3552 178_004_scaffold_3552
Species: Streptococcus parasanguinis (50%)
2 1752 bp 39.04 5.31 100.00
NECEvent2014_8_4_scaffold_4833 178_004_scaffold_4833
Species: Streptococcus sp. C150 (50%)
2 1227 bp 38.30 3.67 79.71
NECEvent2014_8_4_scaffold_5345 178_004_scaffold_5345
Species: Streptococcus sp. HSISS2 (50%)
2 1083 bp 36.38 3.32 84.76
NECEvent2014_8_4_scaffold_4067 178_004_scaffold_4067
Species: Streptococcus sp. HSISS3 (50%)
2 1509 bp 38.90 3.28 68.59
NECEvent2014_8_4_scaffold_4323 178_004_scaffold_4323
Species: Streptococcus salivarius CAG:79 (50%)
2 1398 bp 36.62 6.44 98.93
NECEvent2014_8_4_scaffold_4579 178_004_scaffold_4579
Species: Streptococcus salivarius (100%)
2 1303 bp 38.45 4.83 99.92
NECEvent2014_8_4_scaffold_5603 178_004_scaffold_5603
Species: Streptococcus salivarius (50%)
2 1029 bp 41.89 3.21 99.71
NECEvent2014_8_4_scaffold_5348 178_004_scaffold_5348
Species: Streptococcus mitis (50%)
2 1082 bp 43.62 3.88 90.11
NECEvent2014_8_4_scaffold_3557 178_004_scaffold_3557
Species: Streptococcus salivarius (100%)
2 1750 bp 41.31 3.26 77.49
NECEvent2014_8_4_scaffold_4325 178_004_scaffold_4325
Species: Streptococcus sp. HSISS2 (50%)
2 1398 bp 45.57 6.65 100.64
NECEvent2014_8_4_scaffold_4837 178_004_scaffold_4837
Species: Streptococcus sp. ACS2 (50%)
2 1227 bp 41.56 3.91 87.78
NECEvent2014_8_4_scaffold_2279 178_004_scaffold_2279
Species: Streptococcus sp. HSISS3 (50%)
2 2882 bp 44.34 4.53 99.41
NECEvent2014_8_4_scaffold_2024 178_004_scaffold_2024
Species: Streptococcus sp. HSISS3 (50%)
2 3210 bp 39.84 6.45 93.08
NECEvent2014_8_4_scaffold_2025 178_004_scaffold_2025
Species: Streptococcus salivarius (50%)
2 3209 bp 41.51 5.42 89.56
NECEvent2014_8_4_scaffold_2793 178_004_scaffold_2793
Species: Streptococcus vestibularis (50%)
2 2318 bp 43.14 6.15 100.43
NECEvent2014_8_4_scaffold_4073 178_004_scaffold_4073
Species: Streptococcus mitis (100%)
2 1507 bp 40.01 3.88 93.76
NECEvent2014_8_4_scaffold_3562 178_004_scaffold_3562
Species: Streptococcus sp. HSISS3 (50%)
2 1748 bp 40.79 4.12 87.19
Displaying items 351-400 of 676 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.