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NECEvent2014_8_4_Streptococcus_HSISS3-rel_41_5

NECEvent2014_8_4_Streptococcus_41_5
In projects: NECEvent2014_8_4

Consensus taxonomy: Streptococcus  →  Lactobacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_8_4_UNK

Properties

Avg. coverage: 5.20 Longest contig: 7.99 Kbp Bin length: 1.39 Mbp GC content: 40.63 %
Contigs count: 676 Features count: 1591 rRNAs count: 0 tRNAs count: 12

Genome completeness

near complete RP 43 / 55 MC: 2 BSCG 42 / 51 ASCG 10 / 38 MC: 3

Description

May include other low abundance Strep.

Displaying items 401-450 of 676 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_4330 178_004_scaffold_4330
Species: Streptococcus sp. HSISS3 (100%)
2 1397 bp 41.16 4.72 86.33
NECEvent2014_8_4_scaffold_3051 178_004_scaffold_3051
Species: Streptococcus sp. HSISS3 (50%)
2 2068 bp 40.62 4.35 97.05
NECEvent2014_8_4_scaffold_4075 178_004_scaffold_4075
Species: Streptococcus sp. C150 (50%)
2 1506 bp 37.85 4.28 80.28
NECEvent2014_8_4_scaffold_5355 178_004_scaffold_5355
Species: Streptococcus sp. HSISS3 (100%)
2 1081 bp 42.46 3.47 100.18
NECEvent2014_8_4_scaffold_4588 178_004_scaffold_4588
Species: Streptococcus sp. SR4 (50%)
2 1301 bp 41.89 4.15 100.08
NECEvent2014_8_4_scaffold_3821 178_004_scaffold_3821
Species: Streptococcus sp. HSISS3 (50%)
2 1616 bp 37.93 3.62 84.65
NECEvent2014_8_4_scaffold_4077 178_004_scaffold_4077
Species: Streptococcus salivarius (50%)
2 1505 bp 41.26 5.38 87.91
NECEvent2014_8_4_scaffold_5101 178_004_scaffold_5101
Species: Streptococcus salivarius (50%)
2 1151 bp 32.32 4.69 88.36
NECEvent2014_8_4_scaffold_2800 178_004_scaffold_2800
Species: Streptococcus sp. HSISS2 (50%)
2 2311 bp 40.93 4.93 98.14
NECEvent2014_8_4_scaffold_2546 178_004_scaffold_2546
Species: Streptococcus sp. C150 (100%)
2 2576 bp 45.19 5.36 100.04
NECEvent2014_8_4_scaffold_5618 178_004_scaffold_5618
Species: Streptococcus sp. C150 (50%)
2 1025 bp 43.22 6.00 98.63
NECEvent2014_8_4_scaffold_4339 178_004_scaffold_4339
Species: Streptococcus sp. HSISS2 (50%)
2 1394 bp 38.88 3.01 94.05
NECEvent2014_8_4_scaffold_4595 178_004_scaffold_4595
Species: Streptococcus salivarius CAG:79 (50%)
2 1299 bp 43.42 4.39 99.54
NECEvent2014_8_4_scaffold_4341 178_004_scaffold_4341
Species: Streptococcus salivarius (100%)
2 1394 bp 41.68 2.91 75.11
NECEvent2014_8_4_scaffold_5365 178_004_scaffold_5365
Species: Streptococcus sp. HSISS2 (50%)
2 1078 bp 41.37 4.17 99.07
NECEvent2014_8_4_scaffold_3574 178_004_scaffold_3574
Species: Streptococcus salivarius (50%)
2 1742 bp 38.35 3.10 79.39
NECEvent2014_8_4_scaffold_5369 178_004_scaffold_5369
Species: Streptococcus infantis (50%)
2 1078 bp 42.86 5.84 89.33
NECEvent2014_8_4_scaffold_3067 178_004_scaffold_3067
Species: Streptococcus sp. M334 (50%)
2 2053 bp 41.40 6.36 83.29
NECEvent2014_8_4_scaffold_4347 178_004_scaffold_4347
Species: Streptococcus salivarius (50%)
2 1391 bp 42.27 3.88 81.96
NECEvent2014_8_4_scaffold_3324 178_004_scaffold_3324
Species: Streptococcus tigurinus (50%)
2 1879 bp 41.41 5.59 87.17
NECEvent2014_8_4_scaffold_4860 178_004_scaffold_4860
Species: Streptococcus sp. C150 (50%)
2 1217 bp 41.82 3.57 83.81
NECEvent2014_8_4_scaffold_4605 178_004_scaffold_4605
Species: Streptococcus sp. M334 (50%)
2 1296 bp 40.66 4.63 94.68
NECEvent2014_8_4_scaffold_4094 178_004_scaffold_4094
Species: Streptococcus sp. BS29a (50%)
2 1493 bp 42.60 4.02 95.85
NECEvent2014_8_4_scaffold_4862 178_004_scaffold_4862
Species: Streptococcus oligofermentans (50%)
2 1217 bp 39.93 3.94 90.71
NECEvent2014_8_4_scaffold_3584 178_004_scaffold_3584
Species: Streptococcus oralis (50%)
2 1734 bp 40.48 5.02 92.56
NECEvent2014_8_4_scaffold_2817 178_004_scaffold_2817
Species: Streptococcus sp. SR4 (50%)
2 2288 bp 42.88 4.39 97.29
NECEvent2014_8_4_scaffold_4353 178_004_scaffold_4353
Species: Streptococcus mitis (100%)
2 1387 bp 44.05 4.33 100.14
NECEvent2014_8_4_scaffold_4866 178_004_scaffold_4866
Species: Streptococcus sp. C150 (100%)
2 1217 bp 37.39 4.44 97.12
NECEvent2014_8_4_scaffold_5122 178_004_scaffold_5122
Species: Streptococcus sp. HSISS2 (100%)
2 1143 bp 41.91 3.67 99.74
NECEvent2014_8_4_scaffold_4099 178_004_scaffold_4099
Species: Streptococcus sp. HSISS3 (50%)
2 1492 bp 37.60 3.62 81.84
NECEvent2014_8_4_scaffold_5123 178_004_scaffold_5123
Species: Streptococcus sp. C150 (100%)
2 1143 bp 36.57 3.81 99.21
NECEvent2014_8_4_scaffold_4868 178_004_scaffold_4868
Species: Streptococcus salivarius (100%)
2 1216 bp 32.89 3.45 98.68
NECEvent2014_8_4_scaffold_1541 178_004_scaffold_1541
Species: Streptococcus sp. HSISS3 (50%)
2 4113 bp 38.63 4.08 89.06
NECEvent2014_8_4_scaffold_4357 178_004_scaffold_4357
Species: Streptococcus mitis (50%)
2 1383 bp 45.55 6.40 100.00
NECEvent2014_8_4_scaffold_5125 178_004_scaffold_5125
Species: Streptococcus pseudopneumoniae (50%)
2 1142 bp 41.51 5.25 79.60
NECEvent2014_8_4_scaffold_4359 178_004_scaffold_4359
Species: Streptococcus vestibularis (50%)
2 1383 bp 40.64 4.23 79.61
NECEvent2014_8_4_scaffold_5639 178_004_scaffold_5639
Species: Streptococcus salivarius (50%)
2 1019 bp 44.85 6.18 78.31
NECEvent2014_8_4_scaffold_5128 178_004_scaffold_5128
Species: Streptococcus sp. HSISS2 (100%)
2 1142 bp 37.22 7.49 98.51
NECEvent2014_8_4_scaffold_2825 178_004_scaffold_2825
Species: Streptococcus salivarius (50%)
2 2281 bp 37.13 6.25 99.96
NECEvent2014_8_4_scaffold_4361 178_004_scaffold_4361
Species: Streptococcus pneumoniae (100%)
2 1382 bp 41.68 4.99 64.04
NECEvent2014_8_4_scaffold_1546 178_004_scaffold_1546
Species: Streptococcus vestibularis (50%)
2 4107 bp 42.46 7.71 96.71
NECEvent2014_8_4_scaffold_3338 178_004_scaffold_3338
Species: Streptococcus sp. HSISS2 (50%)
2 1872 bp 41.77 4.09 86.38
NECEvent2014_8_4_scaffold_2827 178_004_scaffold_2827
Species: Streptococcus salivarius (50%)
2 2278 bp 40.08 4.61 89.16
NECEvent2014_8_4_scaffold_4363 178_004_scaffold_4363
Species: Streptococcus mitis (50%)
2 1382 bp 39.51 3.69 87.92
NECEvent2014_8_4_scaffold_5643 178_004_scaffold_5643
Species: Streptococcus mitis (100%)
2 1018 bp 36.25 3.98 52.16
NECEvent2014_8_4_scaffold_3596 178_004_scaffold_3596
Species: Streptococcus sp. M334 (50%)
2 1729 bp 36.26 4.86 88.66
NECEvent2014_8_4_scaffold_4109 178_004_scaffold_4109
Species: Streptococcus sp. HSISS2 (100%)
2 1485 bp 43.64 4.85 93.54
NECEvent2014_8_4_scaffold_5645 178_004_scaffold_5645
Species: Streptococcus sp. HSISS2 (100%)
2 1018 bp 37.52 4.27 92.53
NECEvent2014_8_4_scaffold_2830 178_004_scaffold_2830
Species: Streptococcus sp. HSISS3 (100%)
2 2274 bp 39.93 6.00 89.97
NECEvent2014_8_4_scaffold_3599 178_004_scaffold_3599
Species: Streptococcus pneumoniae (50%)
2 1728 bp 44.56 5.12 98.26
Displaying items 401-450 of 676 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.