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NECEvent2014_8_5_scaffold_23

Alias: 178_005_scaffold_23

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_5_scaffold_23_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14..1444)
DNA (1431bp) protein (477aa)
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
Adenylosuccinate lyase n=8 Tax=Clostridium perfringens RepID=H7CX64_CLOPF rbh
NECEvent2014_8_5_scaffold_23_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1687..1947)
DNA (261bp) protein (87aa)
Phosphocarrier protein (Hpr) n=11 Tax=Clostridium perfringens RepID=H7CX65_CLOPF
hpr; phosphocarrier protein
Phosphocarrier protein {ECO:0000313|EMBL:BAB81375.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 /
NECEvent2014_8_5_scaffold_23_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2042..3235)
DNA (1194bp) protein (398aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EIA16521.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EIA16521.1};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
aspC; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQ38_CLOPF rbh
NECEvent2014_8_5_scaffold_23_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3387..3647)
DNA (261bp) protein (87aa)
Stage V sporulation protein S n=11 Tax=Clostridium perfringens RepID=H7CX67_CLOPF
spoVS; stage V sporulation protein S
Stage V sporulation protein S {ECO:0000313|EMBL:EDT13823.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str
NECEvent2014_8_5_scaffold_23_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3865..5400)
DNA (1536bp) protein (512aa)
Ribonuclease Y {ECO:0000255|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000255|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00335};; TaxID=195102 species="Bacteria; Firmicutes; Clostridi
Ribonuclease Y n=7 Tax=Clostridium perfringens RepID=RNY_CLOP1 rbh
phosphodiesterase
NECEvent2014_8_5_scaffold_23_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5749..6807)
DNA (1059bp) protein (353aa)
Protein RecA n=2 Tax=Clostridium perfringens RepID=B1BG38_CLOPF rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=451755 species="Bacteria; Firmicute
recA; recombinase A
NECEvent2014_8_5_scaffold_23_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6943..7533)
DNA (591bp) protein (197aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=7 Tax=Clostridium perfringens RepID=H7CX70_CLOPF rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EIA16525.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
NECEvent2014_8_5_scaffold_23_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7517..8854)
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO n=9 Tax=Clostridium perfringens RepID=RIMO_CLOP1 rbh
tRNA modifying protein
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
NECEvent2014_8_5_scaffold_23_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8923..11313)
DNA (2391bp) protein (797aa)
DNA translocase FtsK n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SSE4_CLOPS rbh
DNA translocase FtsK {ECO:0000313|EMBL:ABG86706.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101
ftsK; DNA translocase FtsK
NECEvent2014_8_5_scaffold_23_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11445..12134)
DNA (690bp) protein (230aa)
clpP; Clp protease (EC:3.4.21.92)
Clp protease {ECO:0000313|EMBL:EDT13829.1}; EC=3.4.21.92 {ECO:0000313|EMBL:EDT13829.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="C
Clp protease n=4 Tax=Clostridium perfringens RepID=B1BG34_CLOPF rbh
NECEvent2014_8_5_scaffold_23_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12188..13384)
DNA (1197bp) protein (399aa)
aspartate kinase I (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
Aspartokinase n=7 Tax=Clostridium perfringens RepID=H7CX74_CLOPF rbh
NECEvent2014_8_5_scaffold_23_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13398..13673)
DNA (276bp) protein (92aa)
PRC-barrel domain-containing protein n=11 Tax=Clostridium perfringens RepID=H7CX75_CLOPF
PRC-barrel domain-containing protein
PRC-barrel domain protein {ECO:0000313|EMBL:EDT26228.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str.
NECEvent2014_8_5_scaffold_23_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13808..15916)
DNA (2109bp) protein (703aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase
pnpA; polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8) rbh
Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=PNP_CLOPS rbh
NECEvent2014_8_5_scaffold_23_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16008..16271)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=11 Tax=Clostridium perfringens RepID=RS15_CLOP1
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_8_5_scaffold_23_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16387..17316)
DNA (930bp) protein (310aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=451755 species="Bacteria; Firmicutes;
ribF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BWX1_CLOPF rbh
NECEvent2014_8_5_scaffold_23_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17320..18204)
DNA (885bp) protein (295aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BWX2_CLOPF rbh
truB; tRNA pseudouridine synthase B
NECEvent2014_8_5_scaffold_23_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18208..19161)
DNA (954bp) protein (318aa)
DHH subfamily 1 protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RII4_CLOPF rbh
DHH subfamily 1 protein
DHH subfamily 1 protein {ECO:0000313|EMBL:EDT26236.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_8_5_scaffold_23_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19165..19515)
DNA (351bp) protein (117aa)
Ribosome-binding factor A n=10 Tax=Clostridium perfringens RepID=RBFA_CLOP1
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_8_5_scaffold_23_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19537..21576)
DNA (2040bp) protein (680aa)
Translation initiation factor IF-2 n=9 Tax=Clostridium perfringens RepID=IF2_CLOP1 rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
infB; translation initiation factor IF-2
NECEvent2014_8_5_scaffold_23_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21607..21909)
DNA (303bp) protein (101aa)
Ribosomal protein L7Ae family protein n=7 Tax=Clostridium perfringens RepID=H7CX83_CLOPF
ribosomal protein L7Ae family protein
Ribosomal protein, L7Ae family {ECO:0000313|EMBL:EDT13816.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E st
NECEvent2014_8_5_scaffold_23_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21902..22168)
DNA (267bp) protein (89aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=H7CX84_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81394.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_8_5_scaffold_23_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22196..23296)
DNA (1101bp) protein (367aa)
Transcription elongation factor NusA n=7 Tax=Clostridium perfringens RepID=H7CX85_CLOPF rbh
nusA; transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
NECEvent2014_8_5_scaffold_23_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23316..23780)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP n=7 Tax=Clostridium perfringens RepID=RIMP_CLOP1 rbh
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
NECEvent2014_8_5_scaffold_23_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24013..28362)
DNA (4350bp) protein (1450aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=883064 species="Bacteria; Firmicut
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CS27_CLOPF rbh
NECEvent2014_8_5_scaffold_23_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28440..29489)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS0
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=3 Tax=Clostridium perfringens RepID=B1RIH6_CLOPF rbh
NECEvent2014_8_5_scaffold_23_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29509..30516)
DNA (1008bp) protein (336aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
Putative zinc metalloprotease CPE1693 n=4 Tax=Clostridium perfringens RepID=Y1693_CLOPE rbh
hypothetical protein
NECEvent2014_8_5_scaffold_23_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30528..31682)
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQ62_CLOPF rbh
NECEvent2014_8_5_scaffold_23_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32042..32836)
DNA (795bp) protein (265aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Phosphatidate cytidylyltransferase n=5 Tax=Clostridium perfringens RepID=B1BG16_CLOPF rbh
NECEvent2014_8_5_scaffold_23_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32854..33615)
DNA (762bp) protein (254aa)
uppS; undecaprenyl pyrophosphate synthase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
Isoprenyl transferase n=11 Tax=Clostridium perfringens RepID=ISPT_CLOPE rbh
NECEvent2014_8_5_scaffold_23_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33680..34237)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=11 Tax=Clostridium perfringens RepID=RRF_CLOP1 rbh
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=488537 species="Bacteria;
Displaying items 1-30 of 88 in total

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