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NECEvent2014_8_5_scaffold_524

Alias: 178_005_scaffold_524

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_5_scaffold_524_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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194..1132
DNA (939bp) protein (313aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
Thioredoxin reductase n=10 Tax=Clostridium perfringens RepID=H7CZE5_CLOPF rbh
thioredoxin-disulfide reductase
NECEvent2014_8_5_scaffold_524_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1135..1368
DNA (234bp) protein (78aa)
YruB family glutaredoxin-like protein n=11 Tax=Clostridium perfringens RepID=H7CZE4_CLOPF
YruB family glutaredoxin-like protein
Glutaredoxin-like protein, YruB-family {ECO:0000313|EMBL:EDT26005.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfring
NECEvent2014_8_5_scaffold_524_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1385..2833
DNA (1449bp) protein (483aa)
gapN; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.9)
Glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent {ECO:0000313|EMBL:EDT71238.1}; EC=1.2.1.9 {ECO:0000313|EMBL:EDT71238.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales
Glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent n=3 Tax=Clostridium perfringens RepID=Q0TML4_CLOP1 rbh
NECEvent2014_8_5_scaffold_524_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2955..3182)
DNA (228bp) protein (76aa)
YruB family glutaredoxin-like protein n=10 Tax=Clostridium perfringens RepID=H7CZE2_CLOPF
glutaredoxin
Glutaredoxin-like protein, YruB-family {ECO:0000313|EMBL:EDT14437.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfring
NECEvent2014_8_5_scaffold_524_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3640..4368
DNA (729bp) protein (243aa)
Transcriptional regulator, GntR family n=2 Tax=Clostridium perfringens RepID=B1RA04_CLOPF rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EDT22932.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfring
GntR family transcriptional regulator
NECEvent2014_8_5_scaffold_524_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4359..5087
DNA (729bp) protein (243aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO
nagB; glucosamine-6-phosphate deaminase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RA05_CLOPF rbh
NECEvent2014_8_5_scaffold_524_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5314..6699
DNA (1386bp) protein (462aa)
DNA repair protein radA n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RA06_CLOPF rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. AT
radA; DNA repair protein RadA
NECEvent2014_8_5_scaffold_524_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6719..7783
DNA (1065bp) protein (355aa)
DNA integrity scanning protein DisA n=9 Tax=Clostridium perfringens RepID=DISA_CLOPE rbh
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-R
NECEvent2014_8_5_scaffold_524_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7817..8218)
DNA (402bp) protein (134aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=Q8XHQ1_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB82137.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_8_5_scaffold_524_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8485..9636
DNA (1152bp) protein (384aa)
PIN/TRAM domain protein n=4 Tax=Clostridium perfringens RepID=H7CZD5_CLOPF rbh
PIN/TRAM domain-containing protein
PIN/TRAM domain protein {ECO:0000313|EMBL:EIA15943.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_8_5_scaffold_524_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9650..10327
DNA (678bp) protein (226aa)
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=8 Tax=Clostridium perfringens RepID=ISPD_CLOP1 rbh
NECEvent2014_8_5_scaffold_524_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10681..12393
DNA (1713bp) protein (571aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:000025
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=6 Tax=Clostridium perfringens RepID=SYP_CLOPE rbh
NECEvent2014_8_5_scaffold_524_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12498..13898
DNA (1401bp) protein (467aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
Cysteine--tRNA ligase n=4 Tax=Clostridium perfringens RepID=SYC_CLOPE rbh
NECEvent2014_8_5_scaffold_524_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14125..14535
DNA (411bp) protein (137aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01
Mini-ribonuclease 3 n=3 Tax=Clostridium perfringens RepID=B1BK19_CLOPF
hypothetical protein
NECEvent2014_8_5_scaffold_524_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14551..15288
DNA (738bp) protein (246aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408}
Thymidylate synthase ThyX n=8 Tax=Clostridium perfringens RepID=THYX_CLOPE rbh
NECEvent2014_8_5_scaffold_524_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15311..16180
DNA (870bp) protein (290aa)
RNA methyltransferase, TrmH family, group 3 n=5 Tax=Clostridium perfringens RepID=Q0SQC5_CLOPS rbh
RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EDS79826.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium per
NECEvent2014_8_5_scaffold_524_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16196..16705
DNA (510bp) protein (170aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CZC8_CLOPF rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26021.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_8_5_scaffold_524_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16787..17434
DNA (648bp) protein (216aa)
sigH; RNA polymerase factor sigma-70 (EC:2.7.7.6)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EIA15935.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EIA15935.1};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostrid
RNA polymerase factor sigma-70 n=5 Tax=Clostridium perfringens RepID=H7CZC7_CLOPF rbh
NECEvent2014_8_5_scaffold_524_trna_1
unknown

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17517..17589
DNA (73bp)
transferRNA
NECEvent2014_8_5_scaffold_524_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17659..17739
DNA (81bp) protein (27aa)
tuf; elongation factor Tu (EC:3.6.5.3)
DNA gyrase, B subunit {ECO:0000313|EMBL:EDT70008.1}; EC=5.99.1.3 {ECO:0000313|EMBL:EDT70008.1};; Flags: Fragment;; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
Elongation factor Tu n=14 Tax=Clostridium perfringens RepID=EFTU_CLOP1
Displaying 20 items

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